miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 41286 0.73 0.081596
Target:  5'- gGCCGCGCGUggGCgacaucaagguauGGCgCGGCGCgauugccgacaUCCCa -3'
miRNA:   3'- -CGGCGCGCGugCG-------------CCG-GCCGCG-----------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 50104 0.77 0.046897
Target:  5'- cGCCGCGCGaacagaaGC-CGGCCGaGCGCUCgCu -3'
miRNA:   3'- -CGGCGCGCg------UGcGCCGGC-CGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 17061 0.77 0.048167
Target:  5'- cGUCGCGCGCACG-GcGCCgauaGGCGCgCCCg -3'
miRNA:   3'- -CGGCGCGCGUGCgC-CGG----CCGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 30412 0.76 0.053589
Target:  5'- aGCCGCGUGCGC-UGGaCGGCGCUCg- -3'
miRNA:   3'- -CGGCGCGCGUGcGCCgGCCGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 55642 0.75 0.05804
Target:  5'- gGCCGCGCGCuCGUGGCC-GCG-UCCg -3'
miRNA:   3'- -CGGCGCGCGuGCGCCGGcCGCgAGGg -5'
23982 5' -66.1 NC_005262.1 + 1471 0.75 0.066266
Target:  5'- cGCCGCcCGCuCGUcuGCCGGCGCUgCCg -3'
miRNA:   3'- -CGGCGcGCGuGCGc-CGGCCGCGAgGG- -5'
23982 5' -66.1 NC_005262.1 + 57682 0.75 0.066266
Target:  5'- cUCGCGCGCcggGCGCGGCaaGGUGCUUUCg -3'
miRNA:   3'- cGGCGCGCG---UGCGCCGg-CCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 23328 0.74 0.069862
Target:  5'- cGCCGCGCacgaGCACGCgcucgaccacGGCCGGCGUgaagCgCg -3'
miRNA:   3'- -CGGCGCG----CGUGCG----------CCGGCCGCGa---GgG- -5'
23982 5' -66.1 NC_005262.1 + 15897 0.74 0.077626
Target:  5'- cGCCGCGUGCGCGCGaCgUGGCGC-CgCg -3'
miRNA:   3'- -CGGCGCGCGUGCGCcG-GCCGCGaGgG- -5'
23982 5' -66.1 NC_005262.1 + 33939 0.77 0.044454
Target:  5'- cGCgGCGgGCACGCGGCaaGCGaUCCCg -3'
miRNA:   3'- -CGgCGCgCGUGCGCCGgcCGCgAGGG- -5'
23982 5' -66.1 NC_005262.1 + 29722 0.77 0.043165
Target:  5'- gGCCaaGCaGCauccgaaGCGCaGCCGGCGCUCCCg -3'
miRNA:   3'- -CGGcgCG-CG-------UGCGcCGGCCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 46537 0.78 0.039937
Target:  5'- aGCCcaGCGCgGCGC-CGGCCGcCGCUCCCg -3'
miRNA:   3'- -CGG--CGCG-CGUGcGCCGGCcGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 33877 0.83 0.014692
Target:  5'- cGCCGCGCGCgagacgaucguGCGuCGGCCGGCGg-CCCg -3'
miRNA:   3'- -CGGCGCGCG-----------UGC-GCCGGCCGCgaGGG- -5'
23982 5' -66.1 NC_005262.1 + 58898 0.83 0.015512
Target:  5'- uGCCGCGCuGCGCGaucaGGCCGGCGg-CCCg -3'
miRNA:   3'- -CGGCGCG-CGUGCg---CCGGCCGCgaGGG- -5'
23982 5' -66.1 NC_005262.1 + 5178 0.81 0.020906
Target:  5'- gGCCggcgucgcggGCGCGgGCGCGGCCGGCGCgaCCg -3'
miRNA:   3'- -CGG----------CGCGCgUGCGCCGGCCGCGagGG- -5'
23982 5' -66.1 NC_005262.1 + 28571 0.8 0.025265
Target:  5'- cGCCGCGCGCGCGaCGGCaugcccuaCGGCGUgaUCCg -3'
miRNA:   3'- -CGGCGCGCGUGC-GCCG--------GCCGCG--AGGg -5'
23982 5' -66.1 NC_005262.1 + 46703 0.8 0.027398
Target:  5'- cGCCGCGCGCGCaGUGgacaaGCCGGCGCaaUCCg -3'
miRNA:   3'- -CGGCGCGCGUG-CGC-----CGGCCGCG--AGGg -5'
23982 5' -66.1 NC_005262.1 + 20498 0.79 0.028918
Target:  5'- aUCGCGCGCACcauCGGCgCGGCGCUCgCg -3'
miRNA:   3'- cGGCGCGCGUGc--GCCG-GCCGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 11659 0.79 0.031354
Target:  5'- cGUCGCGCuGCACGCuGGCCGGCagaGCUUCg -3'
miRNA:   3'- -CGGCGCG-CGUGCG-CCGGCCG---CGAGGg -5'
23982 5' -66.1 NC_005262.1 + 55016 0.78 0.03587
Target:  5'- aCCuCGCGCACGCGGUCGGCGCg--- -3'
miRNA:   3'- cGGcGCGCGUGCGCCGGCCGCGaggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.