miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 10711 1.12 0.000082
Target:  5'- gGCCGCGCGCACGCGGCCGGCGCUCCCg -3'
miRNA:   3'- -CGGCGCGCGUGCGCCGGCCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 11077 0.86 0.009505
Target:  5'- aGCCGUGCGaGCGCGaCCGGCGUUCCCg -3'
miRNA:   3'- -CGGCGCGCgUGCGCcGGCCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 33877 0.83 0.014692
Target:  5'- cGCCGCGCGCgagacgaucguGCGuCGGCCGGCGg-CCCg -3'
miRNA:   3'- -CGGCGCGCG-----------UGC-GCCGGCCGCgaGGG- -5'
23982 5' -66.1 NC_005262.1 + 58898 0.83 0.015512
Target:  5'- uGCCGCGCuGCGCGaucaGGCCGGCGg-CCCg -3'
miRNA:   3'- -CGGCGCG-CGUGCg---CCGGCCGCgaGGG- -5'
23982 5' -66.1 NC_005262.1 + 5178 0.81 0.020906
Target:  5'- gGCCggcgucgcggGCGCGgGCGCGGCCGGCGCgaCCg -3'
miRNA:   3'- -CGG----------CGCGCgUGCGCCGGCCGCGagGG- -5'
23982 5' -66.1 NC_005262.1 + 28571 0.8 0.025265
Target:  5'- cGCCGCGCGCGCGaCGGCaugcccuaCGGCGUgaUCCg -3'
miRNA:   3'- -CGGCGCGCGUGC-GCCG--------GCCGCG--AGGg -5'
23982 5' -66.1 NC_005262.1 + 46703 0.8 0.027398
Target:  5'- cGCCGCGCGCGCaGUGgacaaGCCGGCGCaaUCCg -3'
miRNA:   3'- -CGGCGCGCGUG-CGC-----CGGCCGCG--AGGg -5'
23982 5' -66.1 NC_005262.1 + 20498 0.79 0.028918
Target:  5'- aUCGCGCGCACcauCGGCgCGGCGCUCgCg -3'
miRNA:   3'- cGGCGCGCGUGc--GCCG-GCCGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 11659 0.79 0.031354
Target:  5'- cGUCGCGCuGCACGCuGGCCGGCagaGCUUCg -3'
miRNA:   3'- -CGGCGCG-CGUGCG-CCGGCCG---CGAGGg -5'
23982 5' -66.1 NC_005262.1 + 50512 0.79 0.03221
Target:  5'- -aCGaCGUGCACGCGGCCcucGCGCUCCg -3'
miRNA:   3'- cgGC-GCGCGUGCGCCGGc--CGCGAGGg -5'
23982 5' -66.1 NC_005262.1 + 28652 0.78 0.034918
Target:  5'- uGCCGuCGCGCGCGCGGCgGaaGC-CCCa -3'
miRNA:   3'- -CGGC-GCGCGUGCGCCGgCcgCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 43921 0.78 0.034918
Target:  5'- aCCGC-CGCGCGCGGCCGGCccGCggCCg -3'
miRNA:   3'- cGGCGcGCGUGCGCCGGCCG--CGagGG- -5'
23982 5' -66.1 NC_005262.1 + 55016 0.78 0.03587
Target:  5'- aCCuCGCGCACGCGGUCGGCGCg--- -3'
miRNA:   3'- cGGcGCGCGUGCGCCGGCCGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 60586 0.78 0.03785
Target:  5'- gGCCuGCGC-CGCGCGGcCCGGCGUcucgCCCu -3'
miRNA:   3'- -CGG-CGCGcGUGCGCC-GGCCGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 25032 0.78 0.03888
Target:  5'- aGCUggGCGCGcCGCGCGGCCauguGCGCaUCCCg -3'
miRNA:   3'- -CGG--CGCGC-GUGCGCCGGc---CGCG-AGGG- -5'
23982 5' -66.1 NC_005262.1 + 46537 0.78 0.039937
Target:  5'- aGCCcaGCGCgGCGC-CGGCCGcCGCUCCCg -3'
miRNA:   3'- -CGG--CGCG-CGUGcGCCGGCcGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 29722 0.77 0.043165
Target:  5'- gGCCaaGCaGCauccgaaGCGCaGCCGGCGCUCCCg -3'
miRNA:   3'- -CGGcgCG-CG-------UGCGcCGGCCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 10791 0.77 0.04328
Target:  5'- gGCCGCGUGCGCGCGGCCucgaucuGCGCa--- -3'
miRNA:   3'- -CGGCGCGCGUGCGCCGGc------CGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 33939 0.77 0.044454
Target:  5'- cGCgGCGgGCACGCGGCaaGCGaUCCCg -3'
miRNA:   3'- -CGgCGCgCGUGCGCCGgcCGCgAGGG- -5'
23982 5' -66.1 NC_005262.1 + 28249 0.77 0.04566
Target:  5'- cGCCGCGCGCAguUGC-GCCGcGCGCUCg- -3'
miRNA:   3'- -CGGCGCGCGU--GCGcCGGC-CGCGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.