miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 95 0.72 0.111789
Target:  5'- cGCCGCacgcuucuGCGCAUGUcaccGGCCGGCGaccgacCUCCa -3'
miRNA:   3'- -CGGCG--------CGCGUGCG----CCGGCCGC------GAGGg -5'
23982 5' -66.1 NC_005262.1 + 174 0.7 0.149532
Target:  5'- cGCagaaGCGUGCgGCGCGGCCGacuucuucgcgagccGCGgcCUCCCc -3'
miRNA:   3'- -CGg---CGCGCG-UGCGCCGGC---------------CGC--GAGGG- -5'
23982 5' -66.1 NC_005262.1 + 1471 0.75 0.066266
Target:  5'- cGCCGCcCGCuCGUcuGCCGGCGCUgCCg -3'
miRNA:   3'- -CGGCGcGCGuGCGc-CGGCCGCGAgGG- -5'
23982 5' -66.1 NC_005262.1 + 2146 0.7 0.1372
Target:  5'- -aUGUGCGCACGCuGGCUGGgaUGCUCgCu -3'
miRNA:   3'- cgGCGCGCGUGCG-CCGGCC--GCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 2654 0.69 0.185324
Target:  5'- uGCCuGCGCgGCGC-CGGgCGGCG-UCCUg -3'
miRNA:   3'- -CGG-CGCG-CGUGcGCCgGCCGCgAGGG- -5'
23982 5' -66.1 NC_005262.1 + 3493 0.66 0.291646
Target:  5'- aUCGCGCcCgACGCGGaUCGGCuuacgguggGUUCCCg -3'
miRNA:   3'- cGGCGCGcG-UGCGCC-GGCCG---------CGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 3548 0.69 0.167819
Target:  5'- uGCCG-GCGUAuCGCGGCCuugacGCGCUUgCu -3'
miRNA:   3'- -CGGCgCGCGU-GCGCCGGc----CGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 4551 0.71 0.126131
Target:  5'- aUCGUGCGCGCGCGGCgcaucucgcgccagCGGCgGCgcugCUCg -3'
miRNA:   3'- cGGCGCGCGUGCGCCG--------------GCCG-CGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 4651 0.68 0.204421
Target:  5'- cGCCGC-CGCugGCGcgagaugcGCCGcGCGCgcacgaugaagCCCc -3'
miRNA:   3'- -CGGCGcGCGugCGC--------CGGC-CGCGa----------GGG- -5'
23982 5' -66.1 NC_005262.1 + 4808 0.7 0.140727
Target:  5'- gGCCGCguaGCGCugGUuucGCCGGCGCgacgcagugCCUu -3'
miRNA:   3'- -CGGCG---CGCGugCGc--CGGCCGCGa--------GGG- -5'
23982 5' -66.1 NC_005262.1 + 4897 0.76 0.05218
Target:  5'- cGCCGgcgaaaccaGCGCuACGCGGCCGGCuccgaUCCCg -3'
miRNA:   3'- -CGGCg--------CGCG-UGCGCCGGCCGcg---AGGG- -5'
23982 5' -66.1 NC_005262.1 + 5079 0.72 0.111789
Target:  5'- gGCgGCGCGUGCGacCGGCucggCGGUGCgcgCCCg -3'
miRNA:   3'- -CGgCGCGCGUGC--GCCG----GCCGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 5123 0.66 0.278512
Target:  5'- uGCCuGCcaUGCGCGaCGGgCGGCGCUgaUCCu -3'
miRNA:   3'- -CGG-CGc-GCGUGC-GCCgGCCGCGA--GGG- -5'
23982 5' -66.1 NC_005262.1 + 5142 0.72 0.107265
Target:  5'- cGCCGCGgGCcugcccgccgaucagGCGcCGGCCGGCGagcaaCUgCCg -3'
miRNA:   3'- -CGGCGCgCG---------------UGC-GCCGGCCGC-----GAgGG- -5'
23982 5' -66.1 NC_005262.1 + 5178 0.81 0.020906
Target:  5'- gGCCggcgucgcggGCGCGgGCGCGGCCGGCGCgaCCg -3'
miRNA:   3'- -CGG----------CGCGCgUGCGCCGGCCGCGagGG- -5'
23982 5' -66.1 NC_005262.1 + 5268 0.66 0.265853
Target:  5'- gGCCGCGCcCGCGCccgcgacGCCGGCcgUCaCCg -3'
miRNA:   3'- -CGGCGCGcGUGCGc------CGGCCGcgAG-GG- -5'
23982 5' -66.1 NC_005262.1 + 5796 0.7 0.136852
Target:  5'- cGCCGCGCGCAUGCacgcguucaugagGGaCUGGCGgUUUg -3'
miRNA:   3'- -CGGCGCGCGUGCG-------------CC-GGCCGCgAGGg -5'
23982 5' -66.1 NC_005262.1 + 5878 0.68 0.214595
Target:  5'- -aCGCGUGCAUGC-GCgCGGCGCaagauggCCUg -3'
miRNA:   3'- cgGCGCGCGUGCGcCG-GCCGCGa------GGG- -5'
23982 5' -66.1 NC_005262.1 + 6009 0.7 0.14803
Target:  5'- aCCGCG-GCaucGCGUGGagaucgagaaGGCGCUCCCg -3'
miRNA:   3'- cGGCGCgCG---UGCGCCgg--------CCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 6298 0.66 0.298393
Target:  5'- cGCCGCcuucuuGCGCuCGcCGGCCgccucucgucGGCGC-CCg -3'
miRNA:   3'- -CGGCG------CGCGuGC-GCCGG----------CCGCGaGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.