miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23995 3' -47.9 NC_005262.1 + 5564 0.66 0.993696
Target:  5'- aUGAUCGUGaagcucucgaacggCGAGGUUcgccgcgagGUCAuGCCGCg -3'
miRNA:   3'- -GCUAGCACaa------------GCUCUAG---------UAGU-UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 5469 0.66 0.993598
Target:  5'- gCGAaccUCGccGUUCGAGAgcuucacgaUCAUguaGGCCGCg -3'
miRNA:   3'- -GCU---AGCa-CAAGCUCU---------AGUAg--UUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 13062 0.66 0.993598
Target:  5'- cCGAUUGUggcuugaccgGUUCGAuuUCAU-GACCGCu -3'
miRNA:   3'- -GCUAGCA----------CAAGCUcuAGUAgUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 8089 0.66 0.993598
Target:  5'- -cAUCGgggcacugGUUCGAGGUCGggAAgCGCa -3'
miRNA:   3'- gcUAGCa-------CAAGCUCUAGUagUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 51033 0.66 0.993598
Target:  5'- uGAUCGUGUcgaacgaCGGGcacAUCAUCGACgGg -3'
miRNA:   3'- gCUAGCACAa------GCUC---UAGUAGUUGgCg -5'
23995 3' -47.9 NC_005262.1 + 49145 0.66 0.993598
Target:  5'- aGGUCGgcacgGUgggCGugcAGGccgCAUCGGCCGCa -3'
miRNA:   3'- gCUAGCa----CAa--GC---UCUa--GUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 40715 0.66 0.993598
Target:  5'- ---cCGUGgcCGGGGUCGUUGacGCCGUg -3'
miRNA:   3'- gcuaGCACaaGCUCUAGUAGU--UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 60384 0.66 0.99254
Target:  5'- aGGUCGccGgcCGcaAGAUCGUCGGCgGCa -3'
miRNA:   3'- gCUAGCa-CaaGC--UCUAGUAGUUGgCG- -5'
23995 3' -47.9 NC_005262.1 + 51953 0.66 0.99254
Target:  5'- uCGGUCGUGcUCGc-GUCGUuCGcggcGCCGCg -3'
miRNA:   3'- -GCUAGCACaAGCucUAGUA-GU----UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 22485 0.66 0.99254
Target:  5'- uCGAUCaGUGcgaacgCGGGAUgAUCGcgauCCGCg -3'
miRNA:   3'- -GCUAG-CACaa----GCUCUAgUAGUu---GGCG- -5'
23995 3' -47.9 NC_005262.1 + 22077 0.66 0.991841
Target:  5'- aCGG-CGUGUUCGGcucgcacacgcacgcGGUCAacgUCGACCuGCu -3'
miRNA:   3'- -GCUaGCACAAGCU---------------CUAGU---AGUUGG-CG- -5'
23995 3' -47.9 NC_005262.1 + 45924 0.66 0.991348
Target:  5'- --cUCGUGaUCGGcAUCAUCAGCgaGCg -3'
miRNA:   3'- gcuAGCACaAGCUcUAGUAGUUGg-CG- -5'
23995 3' -47.9 NC_005262.1 + 43004 0.66 0.991348
Target:  5'- --uUCGUG-UCGGGccaguUCuUCGGCCGCu -3'
miRNA:   3'- gcuAGCACaAGCUCu----AGuAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 51707 0.66 0.990563
Target:  5'- gCGuUCGUGcgcggCGAGAUCAaaaagccggagcugaUCGACCaGCu -3'
miRNA:   3'- -GCuAGCACaa---GCUCUAGU---------------AGUUGG-CG- -5'
23995 3' -47.9 NC_005262.1 + 56720 0.66 0.990563
Target:  5'- gGA-CGUGUcCGAGG-CGUCGgcguucgacauggccGCCGCg -3'
miRNA:   3'- gCUaGCACAaGCUCUaGUAGU---------------UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 12452 0.66 0.99001
Target:  5'- aCGAUCcucgUCGAGA-CGUCGcucacggggcGCCGCg -3'
miRNA:   3'- -GCUAGcacaAGCUCUaGUAGU----------UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 4786 0.66 0.99001
Target:  5'- --cUCGcaugUCGGGAUCGgagcCGGCCGCg -3'
miRNA:   3'- gcuAGCaca-AGCUCUAGUa---GUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 23424 0.67 0.986853
Target:  5'- cCGGcCGUGgUCGAGcgCGugcUCGugCGCg -3'
miRNA:   3'- -GCUaGCACaAGCUCuaGU---AGUugGCG- -5'
23995 3' -47.9 NC_005262.1 + 48818 0.67 0.985012
Target:  5'- cCGGUCGUcggcaagccGUUCGuugaggcgauGGAUgcUGUCGACCGCu -3'
miRNA:   3'- -GCUAGCA---------CAAGC----------UCUA--GUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 33890 0.67 0.985012
Target:  5'- aCGAUCGUGcgUCGGccggcggcccGAUCggUAGCgGCg -3'
miRNA:   3'- -GCUAGCACa-AGCU----------CUAGuaGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.