miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24037 3' -62.3 NC_005262.1 + 58656 0.66 0.462436
Target:  5'- uGCCggCGugCCgaucagcuUCUCGCCGCcuuGGUGGa -3'
miRNA:   3'- cCGGgaGCugGG--------AGAGCGGUG---CCGCC- -5'
24037 3' -62.3 NC_005262.1 + 27636 0.67 0.372543
Target:  5'- cGUCCUCGccggggcugagcucGCCCUCgUCGgUGCGcGCGGg -3'
miRNA:   3'- cCGGGAGC--------------UGGGAG-AGCgGUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 17242 0.68 0.351023
Target:  5'- cGGCCUUgcCGGCCUUCUCGauugcgaCGCGcGCGu -3'
miRNA:   3'- -CCGGGA--GCUGGGAGAGCg------GUGC-CGCc -5'
24037 3' -62.3 NC_005262.1 + 57551 0.8 0.053699
Target:  5'- cGCCCUCGACCUccaUCgUCGCCGCcGCGGc -3'
miRNA:   3'- cCGGGAGCUGGG---AG-AGCGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 47376 0.66 0.435048
Target:  5'- --gCCUCG-CCgaUCuUCGCCGCGGCGu -3'
miRNA:   3'- ccgGGAGCuGGg-AG-AGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 48170 0.66 0.435048
Target:  5'- cGCgCgUCGGCgCCgggcggCUCGUCGCGGCaGGu -3'
miRNA:   3'- cCG-GgAGCUG-GGa-----GAGCGGUGCCG-CC- -5'
24037 3' -62.3 NC_005262.1 + 25764 0.66 0.423474
Target:  5'- cGGCCCUCGGCCgUcgacucgaugaCcagaaugcccgacuUCGgCACGGcCGGg -3'
miRNA:   3'- -CCGGGAGCUGGgA-----------G--------------AGCgGUGCC-GCC- -5'
24037 3' -62.3 NC_005262.1 + 60194 0.66 0.420829
Target:  5'- cGCCCUCGugCCcgaccauguugaUCgugcccgucagcgcgUCGCgCGCGGCGu -3'
miRNA:   3'- cCGGGAGCugGG------------AG---------------AGCG-GUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 56955 0.66 0.417319
Target:  5'- uGCgUCUCGGCCCaaugCUUGUCACGcCGGa -3'
miRNA:   3'- cCG-GGAGCUGGGa---GAGCGGUGCcGCC- -5'
24037 3' -62.3 NC_005262.1 + 51684 0.67 0.390729
Target:  5'- uGCuUCUCGACCUUCaCGCCcugauggGCGGCGc -3'
miRNA:   3'- cCG-GGAGCUGGGAGaGCGG-------UGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 50370 0.67 0.408621
Target:  5'- cGGCCgucacgggCUCGGCCggcgcgggcgcgCcCUCGUUGCGGCGGu -3'
miRNA:   3'- -CCGG--------GAGCUGG------------GaGAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 26932 0.66 0.417319
Target:  5'- aGGCCagcagaagCUCGACCaUUCcCGUCGCGGCc- -3'
miRNA:   3'- -CCGG--------GAGCUGG-GAGaGCGGUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 49288 0.66 0.458732
Target:  5'- cGCCCUCGGCCagcaugccggagaUCaucgccgugcgCGCCGCuGCGGc -3'
miRNA:   3'- cCGGGAGCUGGg------------AGa----------GCGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 14256 0.67 0.400037
Target:  5'- cGGCUUgcCGcACUC-CUCGgCGCGGCGGa -3'
miRNA:   3'- -CCGGGa-GC-UGGGaGAGCgGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 24975 0.66 0.453205
Target:  5'- uGGCCgagCUCG-CCUUCaCGCgC-CGGCGGa -3'
miRNA:   3'- -CCGG---GAGCuGGGAGaGCG-GuGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 59212 0.66 0.417319
Target:  5'- cGGCCC--GGCCggUUCGCCuCGGCGcGg -3'
miRNA:   3'- -CCGGGagCUGGgaGAGCGGuGCCGC-C- -5'
24037 3' -62.3 NC_005262.1 + 51071 0.67 0.399185
Target:  5'- uGGCCugCUCGACCUUCUCcggcgagaacucgGCCugcguCGGCu- -3'
miRNA:   3'- -CCGG--GAGCUGGGAGAG-------------CGGu----GCCGcc -5'
24037 3' -62.3 NC_005262.1 + 11293 0.67 0.366074
Target:  5'- cGGCUCUCGAUCUUgcagguggCGCgcacgauCACGGCGGc -3'
miRNA:   3'- -CCGGGAGCUGGGAga------GCG-------GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 62193 0.66 0.444074
Target:  5'- -aUCCgCGACgCggUUGCCGCGGCGGc -3'
miRNA:   3'- ccGGGaGCUGgGagAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 56844 0.66 0.426128
Target:  5'- aGCgCUCGucGCCCga-CGCCagcGCGGCGGc -3'
miRNA:   3'- cCGgGAGC--UGGGagaGCGG---UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.