miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 62668 0.66 0.435447
Target:  5'- gGGGUgGGuuuaGUCcgcccGGCGGCggcaggGGAGCGCg -3'
miRNA:   3'- -UCCGgCUg---CAGc----UCGCCGa-----CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 61430 0.68 0.357176
Target:  5'- cGGCCGAggaauuccaCGUCGcgaagaaGGCGGCggacGGcgaAGCGCu -3'
miRNA:   3'- uCCGGCU---------GCAGC-------UCGCCGa---CC---UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 61148 0.68 0.35798
Target:  5'- uGGCgcagcagaucgCGGCGgCGGGCGaGCUGacGGGCGCg -3'
miRNA:   3'- uCCG-----------GCUGCaGCUCGC-CGAC--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60960 0.66 0.420971
Target:  5'- cGGGCacgccagcgcgcaaaCGAgGUCGAgGCGcaGgUGGAGCGCc -3'
miRNA:   3'- -UCCG---------------GCUgCAGCU-CGC--CgACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60391 0.68 0.311965
Target:  5'- cGGCCGcaagauCGUCG-GCGGCau-GGCGCa -3'
miRNA:   3'- uCCGGCu-----GCAGCuCGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60343 0.66 0.463342
Target:  5'- gAGGUCGACGggcgguUCGAGCuGauccccGAGCGCg -3'
miRNA:   3'- -UCCGGCUGC------AGCUCGcCgac---CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 59607 0.66 0.444638
Target:  5'- cAGGCCGugGUCGuG-GGCgagaaGAaccucGCGCg -3'
miRNA:   3'- -UCCGGCugCAGCuCgCCGac---CU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 59143 0.7 0.264129
Target:  5'- cGGGCCG-CGUCGccGCGcGCaUGGAGgaCGCg -3'
miRNA:   3'- -UCCGGCuGCAGCu-CGC-CG-ACCUC--GCG- -5'
24091 3' -61.6 NC_005262.1 + 58914 0.66 0.453938
Target:  5'- cAGGCCGGCGgccCGAccgauggcGCGcGCUucucGGucGGCGCg -3'
miRNA:   3'- -UCCGGCUGCa--GCU--------CGC-CGA----CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 58633 0.83 0.030492
Target:  5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3'
miRNA:   3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 57481 0.71 0.201194
Target:  5'- gGGcGCCGACGagaGGCGGCcgGcGAGCGCa -3'
miRNA:   3'- -UC-CGGCUGCagcUCGCCGa-C-CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 57330 0.67 0.391199
Target:  5'- uGGGCCcGCGUCGAuGcCGGCgucucgccGGAGC-Cg -3'
miRNA:   3'- -UCCGGcUGCAGCU-C-GCCGa-------CCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 56802 1.1 0.00029
Target:  5'- aAGGCCGACGUCGAGCGGCUGGAGCGCc -3'
miRNA:   3'- -UCCGGCUGCAGCUCGCCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56758 0.69 0.270581
Target:  5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3'
miRNA:   3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56539 0.72 0.186449
Target:  5'- cGGCaucCGUCGAGCaGCgcgaGGGGCGCa -3'
miRNA:   3'- uCCGgcuGCAGCUCGcCGa---CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56165 0.66 0.463342
Target:  5'- -cGCCGGCGUCGAcauuCGGCcaacguccGGuaAGCGCg -3'
miRNA:   3'- ucCGGCUGCAGCUc---GCCGa-------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 55402 0.67 0.382708
Target:  5'- gAGcGCCG-CaUCGAGCaGCUcGAGCGCc -3'
miRNA:   3'- -UC-CGGCuGcAGCUCGcCGAcCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 53713 0.66 0.463342
Target:  5'- cGGCCG-CGUCGAa-GGCcGuGGCGCu -3'
miRNA:   3'- uCCGGCuGCAGCUcgCCGaCcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 53456 0.68 0.345257
Target:  5'- cGGcGCCGGCGUCGAggacaacggcgugaaGUGGCUcGGcacggccgaAGUGCa -3'
miRNA:   3'- -UC-CGGCUGCAGCU---------------CGCCGA-CC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52819 0.69 0.277159
Target:  5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3'
miRNA:   3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.