miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 56165 0.66 0.463342
Target:  5'- -cGCCGGCGUCGAcauuCGGCcaacguccGGuaAGCGCg -3'
miRNA:   3'- ucCGGCUGCAGCUc---GCCGa-------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 29033 0.67 0.374341
Target:  5'- -cGCCGAgcUCGAGCGGCgccGGcacgacGCGCa -3'
miRNA:   3'- ucCGGCUgcAGCUCGCCGa--CCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 28366 0.8 0.048738
Target:  5'- cGaGCCGACGUCGAacacgaacacgucGCcgGGCUGGAGCGUg -3'
miRNA:   3'- uC-CGGCUGCAGCU-------------CG--CCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51277 0.66 0.463342
Target:  5'- gAGGCgaucGCGUCGcGCGGCaucUGaAGCGCg -3'
miRNA:   3'- -UCCGgc--UGCAGCuCGCCG---ACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43285 0.66 0.453938
Target:  5'- gAGGUCGuCG-CGAGCGccgcGCcgaUGGuGCGCg -3'
miRNA:   3'- -UCCGGCuGCaGCUCGC----CG---ACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 39586 0.66 0.425464
Target:  5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3'
miRNA:   3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60960 0.66 0.420971
Target:  5'- cGGGCacgccagcgcgcaaaCGAgGUCGAgGCGcaGgUGGAGCGCc -3'
miRNA:   3'- -UCCG---------------GCUgCAGCU-CGC--CgACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 33174 0.67 0.408546
Target:  5'- -uGCCGAgCGUCGgcGGCGGCUcGAucuucGCGCc -3'
miRNA:   3'- ucCGGCU-GCAGC--UCGCCGAcCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 52452 0.67 0.382708
Target:  5'- cGuGCCGcGCG-CGAGCGGCgucuugcggaGGAGgGCc -3'
miRNA:   3'- uC-CGGC-UGCaGCUCGCCGa---------CCUCgCG- -5'
24091 3' -61.6 NC_005262.1 + 57330 0.67 0.391199
Target:  5'- uGGGCCcGCGUCGAuGcCGGCgucucgccGGAGC-Cg -3'
miRNA:   3'- -UCCGGcUGCAGCU-C-GCCGa-------CCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 40237 0.67 0.408546
Target:  5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3'
miRNA:   3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 26542 0.66 0.463342
Target:  5'- cGGCCGuuGuUCGuGCGGUUcacgcGGAagGCGCg -3'
miRNA:   3'- uCCGGCugC-AGCuCGCCGA-----CCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60343 0.66 0.463342
Target:  5'- gAGGUCGACGggcgguUCGAGCuGauccccGAGCGCg -3'
miRNA:   3'- -UCCGGCUGC------AGCUCGcCgac---CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 8387 0.66 0.417398
Target:  5'- -aGCCGGCGcUCGAGCuGCUcGAugcgGCGCu -3'
miRNA:   3'- ucCGGCUGC-AGCUCGcCGAcCU----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 10461 0.67 0.391199
Target:  5'- cGGUCGGCGagGuAGCGGCgc--GCGCg -3'
miRNA:   3'- uCCGGCUGCagC-UCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 38047 0.66 0.463342
Target:  5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3'
miRNA:   3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 17222 0.66 0.444638
Target:  5'- cGGcGCUGGCGUCGuggucgucgugGGCGucGCgGGAGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGC-----------UCGC--CGaCCUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.