miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 63497 0.66 0.854961
Target:  5'- gGCGUGCC-CGACGccugucgcaaggaGCCGGAGCc-GCg -3'
miRNA:   3'- -CGCGUGGuGCUGC-------------UGGUCUUGuuCGa -5'
24091 5' -53.6 NC_005262.1 + 63003 0.67 0.801734
Target:  5'- cGUGUACCugGAuuuuguCGGCCAGuacgGCAucGGCa -3'
miRNA:   3'- -CGCGUGGugCU------GCUGGUCu---UGU--UCGa -5'
24091 5' -53.6 NC_005262.1 + 62903 0.66 0.815002
Target:  5'- aGCGCGCCgACGAgcUGGCgCgcaaucucauggcaaAGGACGAGCg -3'
miRNA:   3'- -CGCGUGG-UGCU--GCUG-G---------------UCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 62761 0.7 0.632961
Target:  5'- cGCGCcuauugucgaacGCCACGGCcucaaGAUCGGcGACAAGCUc -3'
miRNA:   3'- -CGCG------------UGGUGCUG-----CUGGUC-UUGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 61680 0.68 0.72972
Target:  5'- gGCGUucaagaaGCCGUGACGAUCAGGGCGcGCc -3'
miRNA:   3'- -CGCG-------UGGUGCUGCUGGUCUUGUuCGa -5'
24091 5' -53.6 NC_005262.1 + 61244 0.73 0.442749
Target:  5'- gGCGCACCuacacCGGCGGCCuGGGCcAGUUc -3'
miRNA:   3'- -CGCGUGGu----GCUGCUGGuCUUGuUCGA- -5'
24091 5' -53.6 NC_005262.1 + 61149 0.71 0.567207
Target:  5'- gGCGCAgcagaUCGCGGCGGC--GGGCGAGCUg -3'
miRNA:   3'- -CGCGU-----GGUGCUGCUGguCUUGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 61117 0.77 0.261135
Target:  5'- aGCGUgagcuuGCUACGGCGGCCAGGACGccgcccGGCg -3'
miRNA:   3'- -CGCG------UGGUGCUGCUGGUCUUGU------UCGa -5'
24091 5' -53.6 NC_005262.1 + 61057 0.71 0.534925
Target:  5'- aGCGCAuCCGgGACcucgaGGCgCAGGGCGAGCg -3'
miRNA:   3'- -CGCGU-GGUgCUG-----CUG-GUCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60715 0.66 0.855799
Target:  5'- uGCGgcaaACCgAUGACGGCgCAGAaccucaACAAGCa -3'
miRNA:   3'- -CGCg---UGG-UGCUGCUG-GUCU------UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60630 0.7 0.610946
Target:  5'- uGCGCACgcuggcgaGCGGCGAgcaCCGcGGGCAAGCa -3'
miRNA:   3'- -CGCGUGg-------UGCUGCU---GGU-CUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60623 0.66 0.847323
Target:  5'- uGCGCGCgAuUGGCGACCuGcGCAuGCg -3'
miRNA:   3'- -CGCGUGgU-GCUGCUGGuCuUGUuCGa -5'
24091 5' -53.6 NC_005262.1 + 60433 0.66 0.829701
Target:  5'- cGCGaACCAa-GCGACCgAGAACGcGCUg -3'
miRNA:   3'- -CGCgUGGUgcUGCUGG-UCUUGUuCGA- -5'
24091 5' -53.6 NC_005262.1 + 60406 0.66 0.811248
Target:  5'- aUGUACCugGACGgGCaCGGGGCGcauAGCa -3'
miRNA:   3'- cGCGUGGugCUGC-UG-GUCUUGU---UCGa -5'
24091 5' -53.6 NC_005262.1 + 60216 0.69 0.698656
Target:  5'- gGCGCACgAgGAaucgGACaccaAGAGCAAGCg -3'
miRNA:   3'- -CGCGUGgUgCUg---CUGg---UCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60136 0.66 0.829701
Target:  5'- aGCGacgGCCGCGAguaCaACCGGGAgAAGCUg -3'
miRNA:   3'- -CGCg--UGGUGCU---GcUGGUCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 60072 0.66 0.838621
Target:  5'- uGCGCaacGCCGCGcGCGACgCGcuGACGGGCa -3'
miRNA:   3'- -CGCG---UGGUGC-UGCUG-GUc-UUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 59071 0.66 0.820574
Target:  5'- aGCGCAUCAagaagcUGACgGGCguGAAgGAGCUc -3'
miRNA:   3'- -CGCGUGGU------GCUG-CUGguCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 58901 0.66 0.838621
Target:  5'- cGCGCugCGCGAUcaGGCCGGcggcccGACcgauGGCg -3'
miRNA:   3'- -CGCGugGUGCUG--CUGGUC------UUGu---UCGa -5'
24091 5' -53.6 NC_005262.1 + 58747 0.69 0.698656
Target:  5'- gGCGCcuaCACGAuCGAgCAGuACGAGCa -3'
miRNA:   3'- -CGCGug-GUGCU-GCUgGUCuUGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.