miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 62674 0.68 0.603224
Target:  5'- cGCaGcgGCCGCaGAGCaAGAggCGGCGGa -3'
miRNA:   3'- -CGaCuaUGGCGgCUCG-UCUa-GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 58832 0.71 0.41972
Target:  5'- gGCUGcUGCgGCgcuuCGGcacGCAGAUCGGCGAc -3'
miRNA:   3'- -CGACuAUGgCG----GCU---CGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 58648 0.66 0.731767
Target:  5'- --cGAUcaGCgCGCCGAGCAGgAUCaGCGc -3'
miRNA:   3'- cgaCUA--UG-GCGGCUCGUC-UAGcCGCu -5'
24092 3' -55.8 NC_005262.1 + 57408 0.68 0.581695
Target:  5'- aGCUGA--CCGCCGAGaAGG-CGGCcGAc -3'
miRNA:   3'- -CGACUauGGCGGCUCgUCUaGCCG-CU- -5'
24092 3' -55.8 NC_005262.1 + 57307 0.74 0.295319
Target:  5'- --cGAgcGCCGCauCGAGCAGAUCGGCa- -3'
miRNA:   3'- cgaCUa-UGGCG--GCUCGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 57301 0.71 0.429076
Target:  5'- cGCUGA--UCGUCGAGCGGGUU-GCGAa -3'
miRNA:   3'- -CGACUauGGCGGCUCGUCUAGcCGCU- -5'
24092 3' -55.8 NC_005262.1 + 57061 1.11 0.000839
Target:  5'- gGCUGAUACCGCCGAGCAGAUCGGCGAg -3'
miRNA:   3'- -CGACUAUGGCGGCUCGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 56279 0.67 0.657306
Target:  5'- --cGGgcUCGgCGAGCAG-UCGGCGAa -3'
miRNA:   3'- cgaCUauGGCgGCUCGUCuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 54927 0.66 0.731767
Target:  5'- cCUGAcGCUGCCGGGCGuGUCGcuGCGc -3'
miRNA:   3'- cGACUaUGGCGGCUCGUcUAGC--CGCu -5'
24092 3' -55.8 NC_005262.1 + 54631 0.71 0.41972
Target:  5'- -gUGGU-CCGCCGAGCAGucCGGCu- -3'
miRNA:   3'- cgACUAuGGCGGCUCGUCuaGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 53135 0.7 0.467685
Target:  5'- cGC-GAUGCCGCgCGAGUucuucGAcgCGGCGAu -3'
miRNA:   3'- -CGaCUAUGGCG-GCUCGu----CUa-GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 53089 0.68 0.635673
Target:  5'- uGCUGuauCCGCaGAGCAacaucaucGUCGGCGAc -3'
miRNA:   3'- -CGACuauGGCGgCUCGUc-------UAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 52298 0.7 0.508006
Target:  5'- --cGAUGCaGCCGAGC---UCGGCGAc -3'
miRNA:   3'- cgaCUAUGgCGGCUCGucuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 52222 0.71 0.429076
Target:  5'- cGCUGGccGCCGCCGgcauAGCAGcgCGcGUGAu -3'
miRNA:   3'- -CGACUa-UGGCGGC----UCGUCuaGC-CGCU- -5'
24092 3' -55.8 NC_005262.1 + 52160 0.67 0.700219
Target:  5'- cGCcGGcGCCGCCGAGCcGAU-GGUGc -3'
miRNA:   3'- -CGaCUaUGGCGGCUCGuCUAgCCGCu -5'
24092 3' -55.8 NC_005262.1 + 51297 0.7 0.467685
Target:  5'- uGCUGcgcAUGCCGCuCGAcCAGAUgGGCGc -3'
miRNA:   3'- -CGAC---UAUGGCG-GCUcGUCUAgCCGCu -5'
24092 3' -55.8 NC_005262.1 + 50827 0.73 0.357843
Target:  5'- cGCgGucgucgaCGCCGAGCcGGUCGGCGAu -3'
miRNA:   3'- -CGaCuaug---GCGGCUCGuCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 50633 0.73 0.341378
Target:  5'- uGCUGGaaaugucGCCGCCGAGCAGcaacCGGCu- -3'
miRNA:   3'- -CGACUa------UGGCGGCUCGUCua--GCCGcu -5'
24092 3' -55.8 NC_005262.1 + 50510 0.73 0.349541
Target:  5'- uGCUGGaACCGCUGucaguGCAGAUCGGa-- -3'
miRNA:   3'- -CGACUaUGGCGGCu----CGUCUAGCCgcu -5'
24092 3' -55.8 NC_005262.1 + 47741 0.68 0.614028
Target:  5'- uCUGGUgcGCCGCCG-GCcg--CGGCGAa -3'
miRNA:   3'- cGACUA--UGGCGGCuCGucuaGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.