miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 5' -52.7 NC_005262.1 + 18143 0.66 0.900413
Target:  5'- --gCUCGAUC-UGUUCgACGaGCucGCGCg -3'
miRNA:   3'- gaaGGGCUAGuACAAGgUGC-CG--UGCG- -5'
24092 5' -52.7 NC_005262.1 + 37386 0.66 0.900413
Target:  5'- --aCCCGAUCcUGUgggCCuauaaGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGuACAa--GGugc--CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 53893 0.66 0.893396
Target:  5'- gUUCCUGAagUCGUGgacgggUCUGCGcGaCGCGCu -3'
miRNA:   3'- gAAGGGCU--AGUACa-----AGGUGC-C-GUGCG- -5'
24092 5' -52.7 NC_005262.1 + 5053 0.66 0.893396
Target:  5'- --gCCUGAUCGgcgGgcaggcCCGCGGCggcgGCGCg -3'
miRNA:   3'- gaaGGGCUAGUa--Caa----GGUGCCG----UGCG- -5'
24092 5' -52.7 NC_005262.1 + 57857 0.66 0.893396
Target:  5'- gUUCCgCGAgaagC-UGaaCCGCGGCAuCGCg -3'
miRNA:   3'- gAAGG-GCUa---GuACaaGGUGCCGU-GCG- -5'
24092 5' -52.7 NC_005262.1 + 37696 0.66 0.893396
Target:  5'- -gUCCCaGAagGUGaagCACGGCACGUu -3'
miRNA:   3'- gaAGGG-CUagUACaagGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 19383 0.66 0.893396
Target:  5'- -gUCgCC-AUCGUGU---GCGGCGCGCg -3'
miRNA:   3'- gaAG-GGcUAGUACAaggUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 8813 0.66 0.893396
Target:  5'- cCUUCCUGA--AUGccgcgCCAgaUGGCGCGCu -3'
miRNA:   3'- -GAAGGGCUagUACaa---GGU--GCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 17071 0.66 0.873925
Target:  5'- --aUCCGGUCGUGccggauugcgccggcUugUCCACuGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGUAC---------------A--AGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 40462 0.67 0.854446
Target:  5'- -aUCCCGGccgugCAUGggCCG-GGCugGUa -3'
miRNA:   3'- gaAGGGCUa----GUACaaGGUgCCGugCG- -5'
24092 5' -52.7 NC_005262.1 + 38787 0.67 0.854446
Target:  5'- gUUCgaGAUCAUGcgcUgCACGGCGCGa -3'
miRNA:   3'- gAAGggCUAGUACa--AgGUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 19669 0.67 0.854446
Target:  5'- aCUUCUcgcuuuugaaagCGAUUAcGUUCCGCaGCGCGUc -3'
miRNA:   3'- -GAAGG------------GCUAGUaCAAGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 35054 0.67 0.845927
Target:  5'- uCUUCaCGGUCAUcacGgcgUCCG-GGCGCGCg -3'
miRNA:   3'- -GAAGgGCUAGUA---Ca--AGGUgCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 49408 0.67 0.845927
Target:  5'- ---aCUGGUC-UGUUCgGCGGCAUGg -3'
miRNA:   3'- gaagGGCUAGuACAAGgUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 26035 0.67 0.845927
Target:  5'- --gCCCag-CAgcucgCCGCGGCGCGCa -3'
miRNA:   3'- gaaGGGcuaGUacaa-GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 61638 0.67 0.837183
Target:  5'- --gCUCGAgggCGaggaggaagugcUGUaCCGCGGCGCGCu -3'
miRNA:   3'- gaaGGGCUa--GU------------ACAaGGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 58293 0.67 0.828222
Target:  5'- -aUCCCGGUCcgGUcgUCGCGGCcuACa- -3'
miRNA:   3'- gaAGGGCUAGuaCAa-GGUGCCG--UGcg -5'
24092 5' -52.7 NC_005262.1 + 14355 0.67 0.819055
Target:  5'- cCUUCUCGGUCAcGaucUUCGCGaGUGCGCg -3'
miRNA:   3'- -GAAGGGCUAGUaCa--AGGUGC-CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 57649 0.67 0.819055
Target:  5'- -aUCUCGAUCAgcaaaaUCC-CGGcCGCGCa -3'
miRNA:   3'- gaAGGGCUAGUaca---AGGuGCC-GUGCG- -5'
24092 5' -52.7 NC_005262.1 + 53555 0.67 0.819055
Target:  5'- --cCCCGAgaUgGUGcUCgGCGcGCACGCg -3'
miRNA:   3'- gaaGGGCU--AgUACaAGgUGC-CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.