miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 63284 0.7 0.251397
Target:  5'- uGCUUGACggCCGG--CUGCUGGcUCGGCg -3'
miRNA:   3'- gCGAGCUG--GGCCugGACGGCC-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 60976 0.69 0.276512
Target:  5'- uCGCUCGAUgCGuuCCUGUCGGcCGuGCc -3'
miRNA:   3'- -GCGAGCUGgGCcuGGACGGCCaGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 60726 0.67 0.396745
Target:  5'- aCGa-CGACaaGGACC-GCUGGcUCGGCg -3'
miRNA:   3'- -GCgaGCUGggCCUGGaCGGCC-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 60179 0.71 0.222681
Target:  5'- gCGCUCGGCCagugggCGGcaACCggcaaggaGCCGGcCGGCg -3'
miRNA:   3'- -GCGAGCUGG------GCC--UGGa-------CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 59977 0.71 0.206824
Target:  5'- gCGCUCGGCaccuuccuCCGGGCCgucgaggaugGCCGGguuccgacCGGCu -3'
miRNA:   3'- -GCGAGCUG--------GGCCUGGa---------CGGCCa-------GCCG- -5'
24093 3' -62.5 NC_005262.1 + 58916 0.68 0.347948
Target:  5'- gGCcggCGGCCC-GACCgaugGCgcgcgcuucuCGGUCGGCg -3'
miRNA:   3'- gCGa--GCUGGGcCUGGa---CG----------GCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 58734 0.7 0.259967
Target:  5'- gCGC-CGccGCCgCGGGCCUgcccgccgaucaggcGCCGGcCGGCg -3'
miRNA:   3'- -GCGaGC--UGG-GCCUGGA---------------CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 57752 0.66 0.43163
Target:  5'- gCGCUCGagggcauuGCgCGcaauGGCgUGCUGGUUGGCg -3'
miRNA:   3'- -GCGAGC--------UGgGC----CUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 57200 1.11 0.000213
Target:  5'- cCGCUCGACCCGGACCUGCCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGGGCCUGGACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 53239 0.68 0.317877
Target:  5'- aCGCUgCGGCUgcgCGcGGCCgGUCGcGUCGGCa -3'
miRNA:   3'- -GCGA-GCUGG---GC-CUGGaCGGC-CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 52943 0.72 0.17359
Target:  5'- gCGC-CG-CCUGGGCUUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGaGCuGGGCCUGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 51238 0.67 0.358942
Target:  5'- aGCUCGACgagcgccgCCGcGACCUGCCGccgcaacauggaGGCg -3'
miRNA:   3'- gCGAGCUG--------GGC-CUGGACGGCcag---------CCG- -5'
24093 3' -62.5 NC_005262.1 + 51203 0.68 0.303591
Target:  5'- gCGCUC-AUCCGcGacGCCUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGAGcUGGGC-C--UGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 49841 0.69 0.276512
Target:  5'- gCGCgaaUGGCCCGG---UGCCGG-CGGCg -3'
miRNA:   3'- -GCGa--GCUGGGCCuggACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 48576 0.69 0.276512
Target:  5'- uGCUCGACCCGaacgaaGCgaGCCGccUCGGCc -3'
miRNA:   3'- gCGAGCUGGGCc-----UGgaCGGCc-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 48342 0.71 0.196803
Target:  5'- aGCUcggcacgacCGACCCGG-CgCUGCUGG-CGGCc -3'
miRNA:   3'- gCGA---------GCUGGGCCuG-GACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 47726 0.67 0.371802
Target:  5'- gGCUCGccgccuguAUCUGGugCgccGCCGGccgCGGCg -3'
miRNA:   3'- gCGAGC--------UGGGCCugGa--CGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 46449 0.66 0.43163
Target:  5'- cCGCcCG-CgCCGGACCcgaaUGCCGcGcCGGCc -3'
miRNA:   3'- -GCGaGCuG-GGCCUGG----ACGGC-CaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 46139 0.69 0.263712
Target:  5'- aGCUCGGCgcgCUGGcgggcgaucucuGCCUGCUGcUCGGCg -3'
miRNA:   3'- gCGAGCUG---GGCC------------UGGACGGCcAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.