miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 22632 0.66 0.69759
Target:  5'- -cGCGGCGGugcccuccuGCGcGCGCUGCA-CGGu -3'
miRNA:   3'- caCGUCGUCu--------UGCuCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 9673 0.67 0.621469
Target:  5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3'
miRNA:   3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 61583 0.67 0.610553
Target:  5'- -aGCGGCuucGAcGCGAuGUGCCGCGcgaUCGAa -3'
miRNA:   3'- caCGUCGu--CU-UGCU-CGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 51232 0.87 0.03141
Target:  5'- -aGCAGCAGcucGACGAGCGCCGCcgCGAc -3'
miRNA:   3'- caCGUCGUC---UUGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 63235 0.66 0.675994
Target:  5'- -aGCGGUuGGGCGAGCGgUCGCGcaCGAa -3'
miRNA:   3'- caCGUCGuCUUGCUCGC-GGCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 5190 0.66 0.66513
Target:  5'- gGUGCAGCGcauCGAgGCGCCcCAUCa- -3'
miRNA:   3'- -CACGUCGUcuuGCU-CGCGGcGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 41208 0.66 0.654235
Target:  5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3'
miRNA:   3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5'
24094 3' -56.3 NC_005262.1 + 9174 0.66 0.650962
Target:  5'- cUGCucGGCGGAccACGAGCcgaGCCGCgaguuguagcugacGUCGAu -3'
miRNA:   3'- cACG--UCGUCU--UGCUCG---CGGCG--------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 21771 0.66 0.64332
Target:  5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3'
miRNA:   3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 52181 0.67 0.621469
Target:  5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3'
miRNA:   3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 60989 0.67 0.632394
Target:  5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3'
miRNA:   3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 29152 0.66 0.64332
Target:  5'- -aGcCAGUcGAGCGA-CGCCGgGUCGAg -3'
miRNA:   3'- caC-GUCGuCUUGCUcGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 16465 0.66 0.69759
Target:  5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3'
miRNA:   3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 40073 0.66 0.64332
Target:  5'- -gGUcaaAGCAGggUGAuCGCCGCgugGUCGAc -3'
miRNA:   3'- caCG---UCGUCuuGCUcGCGGCG---UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 39594 0.67 0.621469
Target:  5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3'
miRNA:   3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55747 0.67 0.610553
Target:  5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3'
miRNA:   3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 33109 0.66 0.686818
Target:  5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3'
miRNA:   3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 3824 0.66 0.658596
Target:  5'- gGUGCaugcgcgccugaucgAGCGGGcgaaucugcuucGCGAGCGCCuCGUCGu -3'
miRNA:   3'- -CACG---------------UCGUCU------------UGCUCGCGGcGUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.