miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 43073 0.66 0.478846
Target:  5'- aGCUGCcgaGCGACGCgaccgugaugGGCUGCG-CCUUc -3'
miRNA:   3'- aCGACG---UGCUGUG----------CCGGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 10083 0.68 0.361736
Target:  5'- aGCgccacgGCcuuCGACGCGGCCGgGUUCUg- -3'
miRNA:   3'- aCGa-----CGu--GCUGUGCCGGCgCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 14635 0.68 0.32993
Target:  5'- cGCUGCGgcCGAUGCGGCCuGCacgCCCa- -3'
miRNA:   3'- aCGACGU--GCUGUGCCGG-CGca-GGGac -5'
24096 5' -60.8 NC_005262.1 + 63626 0.73 0.173078
Target:  5'- cUGCUGUACGACAUGGCaaaaaGCauGUCgCUGu -3'
miRNA:   3'- -ACGACGUGCUGUGCCGg----CG--CAGgGAC- -5'
24096 5' -60.8 NC_005262.1 + 41123 0.66 0.4501
Target:  5'- cGuCUGCGC-ACugGuCCGCG-CCCUGa -3'
miRNA:   3'- aC-GACGUGcUGugCcGGCGCaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 63718 0.66 0.431472
Target:  5'- gUGCgGCGCGGCcgacuucuucGCGaGCCGCGgccUCCCc- -3'
miRNA:   3'- -ACGaCGUGCUG----------UGC-CGGCGC---AGGGac -5'
24096 5' -60.8 NC_005262.1 + 51684 0.67 0.413303
Target:  5'- cUGCUcGCGCG-CACGGCgGCGcugauugcgCCCg- -3'
miRNA:   3'- -ACGA-CGUGCuGUGCCGgCGCa--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 45633 0.67 0.413303
Target:  5'- cGCUcGCGCGAUcagGCgGGCaCGCGcUCCCg- -3'
miRNA:   3'- aCGA-CGUGCUG---UG-CCG-GCGC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 60378 0.67 0.395614
Target:  5'- cGCUGaaGCGAUGCGGCuCGCcGUCUCg- -3'
miRNA:   3'- aCGACg-UGCUGUGCCG-GCG-CAGGGac -5'
24096 5' -60.8 NC_005262.1 + 41924 0.68 0.370014
Target:  5'- gGCUGCGCGgu-CGGCUucaGCGccgaUCCCUGc -3'
miRNA:   3'- aCGACGUGCuguGCCGG---CGC----AGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 46314 0.67 0.378421
Target:  5'- cGC-GCGCGGCGCGcGCUuCGUCCUg- -3'
miRNA:   3'- aCGaCGUGCUGUGC-CGGcGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 51464 0.67 0.395614
Target:  5'- aUGCUGCcgccgcgcgcuGCGGCACGaGCCGCaUgCCg- -3'
miRNA:   3'- -ACGACG-----------UGCUGUGC-CGGCGcAgGGac -5'
24096 5' -60.8 NC_005262.1 + 470 0.66 0.478846
Target:  5'- cGUUGaccucgGCGACGCGGCgCGCGUguUCCa- -3'
miRNA:   3'- aCGACg-----UGCUGUGCCG-GCGCA--GGGac -5'
24096 5' -60.8 NC_005262.1 + 38963 0.68 0.370014
Target:  5'- gGUgaucgGCACGGCGcCGGCCGCGaUCgCg- -3'
miRNA:   3'- aCGa----CGUGCUGU-GCCGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 42116 0.66 0.468198
Target:  5'- aGCaGCGCGGCGCcGCCGCucagguugcgcguGUCCUUc -3'
miRNA:   3'- aCGaCGUGCUGUGcCGGCG-------------CAGGGAc -5'
24096 5' -60.8 NC_005262.1 + 38851 0.67 0.413303
Target:  5'- aGCUGgGCGcgccGCGCGGCCauguGCGcaUCCCg- -3'
miRNA:   3'- aCGACgUGC----UGUGCCGG----CGC--AGGGac -5'
24096 5' -60.8 NC_005262.1 + 17695 0.68 0.370014
Target:  5'- gUGCUucagguaCGCGGCGCGGCCGuCcUCCCa- -3'
miRNA:   3'- -ACGAc------GUGCUGUGCCGGC-GcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 10474 0.68 0.337684
Target:  5'- aGCgGCGCG-CGCGGUCGCucgCCUUGu -3'
miRNA:   3'- aCGaCGUGCuGUGCCGGCGca-GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 52856 0.66 0.4501
Target:  5'- cUGCUGCGCGuaGCGCGGCuCGaUGUCg--- -3'
miRNA:   3'- -ACGACGUGC--UGUGCCG-GC-GCAGggac -5'
24096 5' -60.8 NC_005262.1 + 59238 0.67 0.414201
Target:  5'- cGCUgGCGCGAgAUGcGCCGCGcgcgcacgaugaagcCCCUGu -3'
miRNA:   3'- aCGA-CGUGCUgUGC-CGGCGCa--------------GGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.