Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24097 | 3' | -61.2 | NC_005262.1 | + | 36448 | 0.66 | 0.441129 |
Target: 5'- gGUCGGGUUCucgGGCaucuugaugaGGUCGAGCagguGGUCGu -3' miRNA: 3'- gCAGUCCGAG---CCG----------UCAGCUCG----CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 62320 | 0.7 | 0.267918 |
Target: 5'- gCGgCAGcGC-CGGCAGaCGAGCGGgCGg -3' miRNA: 3'- -GCaGUC-CGaGCCGUCaGCUCGCCgGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13711 | 0.71 | 0.237118 |
Target: 5'- gCGgcgCGGGUUCGGuCGG-CGcAGCGGCCu -3' miRNA: 3'- -GCa--GUCCGAGCC-GUCaGC-UCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13516 | 0.74 | 0.149972 |
Target: 5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3' miRNA: 3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 14018 | 0.67 | 0.413981 |
Target: 5'- gCGUCcGGCgCGGCAGcggccggagccUCGGGCGcgggcgccGCCGg -3' miRNA: 3'- -GCAGuCCGaGCCGUC-----------AGCUCGC--------CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 32710 | 0.67 | 0.402541 |
Target: 5'- uGUCGGGCcgCGGCucgcccuucaggucGG-CGAGCGcGUCGg -3' miRNA: 3'- gCAGUCCGa-GCCG--------------UCaGCUCGC-CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 21177 | 0.66 | 0.488513 |
Target: 5'- -aUCAugccGUUCGGCAG-CGAGauaaGGCCGg -3' miRNA: 3'- gcAGUc---CGAGCCGUCaGCUCg---CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 2787 | 0.66 | 0.478838 |
Target: 5'- aCGUCucGGCgagCGGCuugaugacGGUCGGcaCGGCCGa -3' miRNA: 3'- -GCAGu-CCGa--GCCG--------UCAGCUc-GCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 29739 | 0.66 | 0.459779 |
Target: 5'- aGUcCGGGUUCuGGUcGUCGAGCaacuGCCGa -3' miRNA: 3'- gCA-GUCCGAG-CCGuCAGCUCGc---CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13470 | 0.69 | 0.30187 |
Target: 5'- uCGUCcuGCgCGGCGGgCGcuGCGGCCGg -3' miRNA: 3'- -GCAGucCGaGCCGUCaGCu-CGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 52359 | 0.68 | 0.346867 |
Target: 5'- gCG-CGGGCgCGGCGuGUCGcgcaccuucGGCGGCCc -3' miRNA: 3'- -GCaGUCCGaGCCGU-CAGC---------UCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 33094 | 0.68 | 0.3711 |
Target: 5'- -uUCGGGgUCcguuuccuggaGGCGGUCGAGC-GCCGu -3' miRNA: 3'- gcAGUCCgAG-----------CCGUCAGCUCGcCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 17352 | 0.66 | 0.441129 |
Target: 5'- -uUCGGGUcCGGCg--CGGGCGGCgCGg -3' miRNA: 3'- gcAGUCCGaGCCGucaGCUCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 59963 | 0.68 | 0.344506 |
Target: 5'- aCGUCacgcgcggGGcGCUCGGCAccuuccuccgggccGUCGAGgaUGGCCGg -3' miRNA: 3'- -GCAG--------UC-CGAGCCGU--------------CAGCUC--GCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13661 | 0.66 | 0.431967 |
Target: 5'- -cUCAGGCucgcuccacUCGGuCAG-CGAGCgcucGGCCGg -3' miRNA: 3'- gcAGUCCG---------AGCC-GUCaGCUCG----CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 45882 | 0.67 | 0.379431 |
Target: 5'- gCGUCGGcGCcgaUCGGCGGcucgccgaaaUCGGGCGGUg- -3' miRNA: 3'- -GCAGUC-CG---AGCCGUC----------AGCUCGCCGgc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 17239 | 0.69 | 0.316352 |
Target: 5'- uCGUCguGGGCgucgCGGgAG-CG-GCGGCCGg -3' miRNA: 3'- -GCAG--UCCGa---GCCgUCaGCuCGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 29132 | 0.7 | 0.255226 |
Target: 5'- aGUCGGGauagCGGUcgucgagccAGUCGAGCGacGCCGg -3' miRNA: 3'- gCAGUCCga--GCCG---------UCAGCUCGC--CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 41556 | 0.67 | 0.422917 |
Target: 5'- gCG-CAGGC-CGGCcGgcgUGGGCGGCgCGg -3' miRNA: 3'- -GCaGUCCGaGCCGuCa--GCUCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 8886 | 0.67 | 0.396464 |
Target: 5'- gCGUCAGGUgCGaGCcGUCGAacuggcGCGGCgCGa -3' miRNA: 3'- -GCAGUCCGaGC-CGuCAGCU------CGCCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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