miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24097 3' -61.2 NC_005262.1 + 36448 0.66 0.441129
Target:  5'- gGUCGGGUUCucgGGCaucuugaugaGGUCGAGCagguGGUCGu -3'
miRNA:   3'- gCAGUCCGAG---CCG----------UCAGCUCG----CCGGC- -5'
24097 3' -61.2 NC_005262.1 + 62320 0.7 0.267918
Target:  5'- gCGgCAGcGC-CGGCAGaCGAGCGGgCGg -3'
miRNA:   3'- -GCaGUC-CGaGCCGUCaGCUCGCCgGC- -5'
24097 3' -61.2 NC_005262.1 + 13711 0.71 0.237118
Target:  5'- gCGgcgCGGGUUCGGuCGG-CGcAGCGGCCu -3'
miRNA:   3'- -GCa--GUCCGAGCC-GUCaGC-UCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 13516 0.74 0.149972
Target:  5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3'
miRNA:   3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5'
24097 3' -61.2 NC_005262.1 + 14018 0.67 0.413981
Target:  5'- gCGUCcGGCgCGGCAGcggccggagccUCGGGCGcgggcgccGCCGg -3'
miRNA:   3'- -GCAGuCCGaGCCGUC-----------AGCUCGC--------CGGC- -5'
24097 3' -61.2 NC_005262.1 + 32710 0.67 0.402541
Target:  5'- uGUCGGGCcgCGGCucgcccuucaggucGG-CGAGCGcGUCGg -3'
miRNA:   3'- gCAGUCCGa-GCCG--------------UCaGCUCGC-CGGC- -5'
24097 3' -61.2 NC_005262.1 + 21177 0.66 0.488513
Target:  5'- -aUCAugccGUUCGGCAG-CGAGauaaGGCCGg -3'
miRNA:   3'- gcAGUc---CGAGCCGUCaGCUCg---CCGGC- -5'
24097 3' -61.2 NC_005262.1 + 2787 0.66 0.478838
Target:  5'- aCGUCucGGCgagCGGCuugaugacGGUCGGcaCGGCCGa -3'
miRNA:   3'- -GCAGu-CCGa--GCCG--------UCAGCUc-GCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 29739 0.66 0.459779
Target:  5'- aGUcCGGGUUCuGGUcGUCGAGCaacuGCCGa -3'
miRNA:   3'- gCA-GUCCGAG-CCGuCAGCUCGc---CGGC- -5'
24097 3' -61.2 NC_005262.1 + 13470 0.69 0.30187
Target:  5'- uCGUCcuGCgCGGCGGgCGcuGCGGCCGg -3'
miRNA:   3'- -GCAGucCGaGCCGUCaGCu-CGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 52359 0.68 0.346867
Target:  5'- gCG-CGGGCgCGGCGuGUCGcgcaccuucGGCGGCCc -3'
miRNA:   3'- -GCaGUCCGaGCCGU-CAGC---------UCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 33094 0.68 0.3711
Target:  5'- -uUCGGGgUCcguuuccuggaGGCGGUCGAGC-GCCGu -3'
miRNA:   3'- gcAGUCCgAG-----------CCGUCAGCUCGcCGGC- -5'
24097 3' -61.2 NC_005262.1 + 17352 0.66 0.441129
Target:  5'- -uUCGGGUcCGGCg--CGGGCGGCgCGg -3'
miRNA:   3'- gcAGUCCGaGCCGucaGCUCGCCG-GC- -5'
24097 3' -61.2 NC_005262.1 + 59963 0.68 0.344506
Target:  5'- aCGUCacgcgcggGGcGCUCGGCAccuuccuccgggccGUCGAGgaUGGCCGg -3'
miRNA:   3'- -GCAG--------UC-CGAGCCGU--------------CAGCUC--GCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 13661 0.66 0.431967
Target:  5'- -cUCAGGCucgcuccacUCGGuCAG-CGAGCgcucGGCCGg -3'
miRNA:   3'- gcAGUCCG---------AGCC-GUCaGCUCG----CCGGC- -5'
24097 3' -61.2 NC_005262.1 + 45882 0.67 0.379431
Target:  5'- gCGUCGGcGCcgaUCGGCGGcucgccgaaaUCGGGCGGUg- -3'
miRNA:   3'- -GCAGUC-CG---AGCCGUC----------AGCUCGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 17239 0.69 0.316352
Target:  5'- uCGUCguGGGCgucgCGGgAG-CG-GCGGCCGg -3'
miRNA:   3'- -GCAG--UCCGa---GCCgUCaGCuCGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 29132 0.7 0.255226
Target:  5'- aGUCGGGauagCGGUcgucgagccAGUCGAGCGacGCCGg -3'
miRNA:   3'- gCAGUCCga--GCCG---------UCAGCUCGC--CGGC- -5'
24097 3' -61.2 NC_005262.1 + 41556 0.67 0.422917
Target:  5'- gCG-CAGGC-CGGCcGgcgUGGGCGGCgCGg -3'
miRNA:   3'- -GCaGUCCGaGCCGuCa--GCUCGCCG-GC- -5'
24097 3' -61.2 NC_005262.1 + 8886 0.67 0.396464
Target:  5'- gCGUCAGGUgCGaGCcGUCGAacuggcGCGGCgCGa -3'
miRNA:   3'- -GCAGUCCGaGC-CGuCAGCU------CGCCG-GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.