miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 5' -53.9 NC_005262.1 + 28055 0.66 0.828392
Target:  5'- cGCcuuGGCCGUaGUGCcaugcgAGGAuCAGCGUGGc -3'
miRNA:   3'- -CGu--UCGGCGcCACG------UCCU-GUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 60503 0.66 0.819189
Target:  5'- cCGGGCCGCGcGgcGCAGGcCGccaagaGCGUGAc -3'
miRNA:   3'- cGUUCGGCGC-Ca-CGUCCuGU------UGUACU- -5'
24098 5' -53.9 NC_005262.1 + 60814 0.66 0.809786
Target:  5'- aGCAcggaGGCCGauugccCGaUGCcGGGCAGCGUGAg -3'
miRNA:   3'- -CGU----UCGGC------GCcACGuCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 2396 0.66 0.809786
Target:  5'- gGC-GGCCuGCGGaaGCGGGAUGuCGUGAg -3'
miRNA:   3'- -CGuUCGG-CGCCa-CGUCCUGUuGUACU- -5'
24098 5' -53.9 NC_005262.1 + 1445 0.66 0.800195
Target:  5'- ----uUCGaCGGUGUAGGGCuGCAUGGu -3'
miRNA:   3'- cguucGGC-GCCACGUCCUGuUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 50408 0.66 0.800195
Target:  5'- gGCGAucagcGCCGCGGagcGCgAGGGCcGCGUGc -3'
miRNA:   3'- -CGUU-----CGGCGCCa--CG-UCCUGuUGUACu -5'
24098 5' -53.9 NC_005262.1 + 13961 0.66 0.800195
Target:  5'- -uGAGCCGCuGGUGCAccagggggccGGugGGCGa-- -3'
miRNA:   3'- cgUUCGGCG-CCACGU----------CCugUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 988 0.66 0.790426
Target:  5'- gGCGAcCUGCGGgGCGGGGCggUGUaGAg -3'
miRNA:   3'- -CGUUcGGCGCCaCGUCCUGuuGUA-CU- -5'
24098 5' -53.9 NC_005262.1 + 37761 0.67 0.749796
Target:  5'- uGCGcGCCGCGGcgagcUGCuGGGCGuaguACGUGc -3'
miRNA:   3'- -CGUuCGGCGCC-----ACGuCCUGU----UGUACu -5'
24098 5' -53.9 NC_005262.1 + 23365 0.67 0.739308
Target:  5'- -gAAGCgCGCGGcgGCgaAGGcccGCAACGUGAa -3'
miRNA:   3'- cgUUCG-GCGCCa-CG--UCC---UGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 10838 0.67 0.72871
Target:  5'- cGCGuccGCCGCGcucagGGGGCGGCAUGAg -3'
miRNA:   3'- -CGUu--CGGCGCcacg-UCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 52061 0.67 0.72871
Target:  5'- uCGAGuCCGgGGUGCGGGAUuuugccGCAUa- -3'
miRNA:   3'- cGUUC-GGCgCCACGUCCUGu-----UGUAcu -5'
24098 5' -53.9 NC_005262.1 + 19119 0.68 0.718014
Target:  5'- gGCuuGUCGCGGU-CGGG-CAGCAUGu -3'
miRNA:   3'- -CGuuCGGCGCCAcGUCCuGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 49088 0.68 0.696376
Target:  5'- aGCAGGCCGUuacgauGGcGCcGGGCAugGUGc -3'
miRNA:   3'- -CGUUCGGCG------CCaCGuCCUGUugUACu -5'
24098 5' -53.9 NC_005262.1 + 56040 0.68 0.685457
Target:  5'- cGCAAgggcccGCCGCagaaGGgGCAGGACAucauccugaACGUGAu -3'
miRNA:   3'- -CGUU------CGGCG----CCaCGUCCUGU---------UGUACU- -5'
24098 5' -53.9 NC_005262.1 + 46978 0.68 0.685457
Target:  5'- -gAAGUCGCGGcugucgUGCAGGaACucCAUGAg -3'
miRNA:   3'- cgUUCGGCGCC------ACGUCC-UGuuGUACU- -5'
24098 5' -53.9 NC_005262.1 + 2553 0.68 0.674486
Target:  5'- cCAGGCCGcCGGUGUAGGuGCGccacACGUa- -3'
miRNA:   3'- cGUUCGGC-GCCACGUCC-UGU----UGUAcu -5'
24098 5' -53.9 NC_005262.1 + 52338 0.69 0.663475
Target:  5'- cGCGAG-CGCGGUaggcacgaugcGCGGGcGCGGCGUGu -3'
miRNA:   3'- -CGUUCgGCGCCA-----------CGUCC-UGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 38528 0.69 0.61924
Target:  5'- uCAGGuuGCGGUGCcAGaGGCGGCGcagGAg -3'
miRNA:   3'- cGUUCggCGCCACG-UC-CUGUUGUa--CU- -5'
24098 5' -53.9 NC_005262.1 + 13998 0.69 0.618134
Target:  5'- uCGGGCCGgaCGGUGCAGGggcguccggcgcgGCAGCGgccgGAg -3'
miRNA:   3'- cGUUCGGC--GCCACGUCC-------------UGUUGUa---CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.