miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 43577 0.66 0.860557
Target:  5'- --uGGGCgcuGCGAuuGAGGCGGCUUugGa -3'
miRNA:   3'- ccuCCUG---CGCUu-CUUCGUCGAGugCc -5'
24099 5' -53.9 NC_005262.1 + 10627 0.66 0.860557
Target:  5'- cGAcGGACGCGAAG-GGCGGgUUGCc- -3'
miRNA:   3'- cCU-CCUGCGCUUCuUCGUCgAGUGcc -5'
24099 5' -53.9 NC_005262.1 + 28946 0.66 0.859743
Target:  5'- uGAGGgucaugugcucgcGCGCGAGGAAGUcggggAGCUgAuCGGc -3'
miRNA:   3'- cCUCC-------------UGCGCUUCUUCG-----UCGAgU-GCC- -5'
24099 5' -53.9 NC_005262.1 + 17586 0.66 0.852311
Target:  5'- cGAGGAgaaGCuGgcGgcGCAGCgCGCGGa -3'
miRNA:   3'- cCUCCUg--CG-CuuCuuCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 9683 0.66 0.852311
Target:  5'- cGAGGGCGCcgucgacgucGAGgcGCAGCa-GCGGg -3'
miRNA:   3'- cCUCCUGCGc---------UUCuuCGUCGagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 13792 0.66 0.843839
Target:  5'- cGGuGGGCGCc--GgcGCGGCUUcaucgGCGGg -3'
miRNA:   3'- -CCuCCUGCGcuuCuuCGUCGAG-----UGCC- -5'
24099 5' -53.9 NC_005262.1 + 52708 0.66 0.841255
Target:  5'- cGGccGACGcCGGAcGAGGCcgcgcugcugacgaAGUUCACGGg -3'
miRNA:   3'- -CCucCUGC-GCUU-CUUCG--------------UCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 51195 0.66 0.829835
Target:  5'- gGGAGGGCGCGcucauccgcgAcgccucgccggcggcAGcAGCAGCUCgACGa -3'
miRNA:   3'- -CCUCCUGCGC----------U---------------UCuUCGUCGAG-UGCc -5'
24099 5' -53.9 NC_005262.1 + 60124 0.66 0.826251
Target:  5'- cGAGGGCGCcAGcGucGCGGCgaaggCAUGGg -3'
miRNA:   3'- cCUCCUGCGcUU-CuuCGUCGa----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56880 0.66 0.826251
Target:  5'- cGAGGAaacgaGCGGAuGAAGUggGGCaCGCGGc -3'
miRNA:   3'- cCUCCUg----CGCUU-CUUCG--UCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 24327 0.66 0.826251
Target:  5'- uGGucGGCGCGAucGAcauGCGGCUCugcguCGGc -3'
miRNA:   3'- -CCucCUGCGCUu-CUu--CGUCGAGu----GCC- -5'
24099 5' -53.9 NC_005262.1 + 17312 0.66 0.82535
Target:  5'- aGGAGGAagcagacCGC-AAGGAGCgcgAGCgcgUCGCGGc -3'
miRNA:   3'- -CCUCCU-------GCGcUUCUUCG---UCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 10461 0.66 0.817153
Target:  5'- --cGGuCgGCGAGGuAGCGGCgcgCGCGGu -3'
miRNA:   3'- ccuCCuG-CGCUUCuUCGUCGa--GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 16542 0.66 0.817153
Target:  5'- cGAaGAUGCGAAGccGCucccGUUCACGGc -3'
miRNA:   3'- cCUcCUGCGCUUCuuCGu---CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 9468 0.67 0.807864
Target:  5'- cGAGGugccgaGCGCGucGAugacguccuGGCGGCUCAUGu -3'
miRNA:   3'- cCUCC------UGCGCuuCU---------UCGUCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 1917 0.67 0.798395
Target:  5'- cGGAGGGUGCGGGuuGcGUGGCUCGCuGGu -3'
miRNA:   3'- -CCUCCUGCGCUUcuU-CGUCGAGUG-CC- -5'
24099 5' -53.9 NC_005262.1 + 57477 0.67 0.798395
Target:  5'- cGGcGGGCGcCGAcgAGAGGCGGCcgGCGa -3'
miRNA:   3'- -CCuCCUGC-GCU--UCUUCGUCGagUGCc -5'
24099 5' -53.9 NC_005262.1 + 49853 0.67 0.788757
Target:  5'- cGGugccGGCgGCGGuaccGGAAGCAGCUCAgcCGGc -3'
miRNA:   3'- -CCuc--CUG-CGCU----UCUUCGUCGAGU--GCC- -5'
24099 5' -53.9 NC_005262.1 + 40598 0.67 0.788757
Target:  5'- uGAcGGugGCGcAGAugccGCAGCauaaUCACGGc -3'
miRNA:   3'- cCU-CCugCGCuUCUu---CGUCG----AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 37885 0.67 0.788757
Target:  5'- cGGAGGcACGgGcGGGAAGUauGGUggCGCGGg -3'
miRNA:   3'- -CCUCC-UGCgC-UUCUUCG--UCGa-GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.