miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 23061 0.66 0.729486
Target:  5'- aCGCGCCgccGCccguGCUCGAGG-GCgucaGCg -3'
miRNA:   3'- -GUGCGGacuUGu---CGAGCUCCuCGa---CG- -5'
24100 3' -55.9 NC_005262.1 + 18078 0.68 0.556421
Target:  5'- gAUGCC-GAACuGCUCGAucacGGccGGCUGCc -3'
miRNA:   3'- gUGCGGaCUUGuCGAGCU----CC--UCGACG- -5'
24100 3' -55.9 NC_005262.1 + 45264 0.69 0.503759
Target:  5'- -gUGCCggucgGGGCuauAGCuUCGAGGuGCUGCg -3'
miRNA:   3'- guGCGGa----CUUG---UCG-AGCUCCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 46742 0.76 0.197491
Target:  5'- gGCGCCgUGcgcgcGACgAGCUCGcGGAGCUGCu -3'
miRNA:   3'- gUGCGG-AC-----UUG-UCGAGCuCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 45060 0.66 0.686817
Target:  5'- aCGCGCC-GAGCcgcgccgaAGCU-GAGGAGC-GCc -3'
miRNA:   3'- -GUGCGGaCUUG--------UCGAgCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 61156 0.66 0.685737
Target:  5'- cCGCGCaggcaUGGGCcgaucuggucaagGGUaUCGAGGAGCUGg -3'
miRNA:   3'- -GUGCGg----ACUUG-------------UCG-AGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 58909 0.66 0.675994
Target:  5'- uCACGCCgaAGCAGgUCGAgucggcgcucGGcaAGCUGCg -3'
miRNA:   3'- -GUGCGGacUUGUCgAGCU----------CC--UCGACG- -5'
24100 3' -55.9 NC_005262.1 + 13797 0.67 0.665129
Target:  5'- gGCGCCgGcGCGGCuucaUCGgcGGGAGCggGCg -3'
miRNA:   3'- gUGCGGaCuUGUCG----AGC--UCCUCGa-CG- -5'
24100 3' -55.9 NC_005262.1 + 40356 0.67 0.632394
Target:  5'- uGCGCCagucgucGGACGGCUCGAuGAcgcggcucauGCUGCc -3'
miRNA:   3'- gUGCGGa------CUUGUCGAGCUcCU----------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 28898 0.68 0.556421
Target:  5'- aACGUCUGcuucGGCAGCaUGAGGAuGCUcGCg -3'
miRNA:   3'- gUGCGGAC----UUGUCGaGCUCCU-CGA-CG- -5'
24100 3' -55.9 NC_005262.1 + 646 0.67 0.610552
Target:  5'- aGCGCUUGuuCGGUUugccguugaCGAGGGuGCUGCa -3'
miRNA:   3'- gUGCGGACuuGUCGA---------GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 47227 0.67 0.632394
Target:  5'- aCGCGCCUGcuCGGCauccgCGgccgugaacGGGAGCgGCu -3'
miRNA:   3'- -GUGCGGACuuGUCGa----GC---------UCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 28962 0.66 0.708299
Target:  5'- gCGCGCgaGGA-AG-UCGGGGAGCUGa -3'
miRNA:   3'- -GUGCGgaCUUgUCgAGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 15127 0.68 0.57795
Target:  5'- aACGCgCUGGccgGCAGCUUGucGAGCUccuGCu -3'
miRNA:   3'- gUGCG-GACU---UGUCGAGCucCUCGA---CG- -5'
24100 3' -55.9 NC_005262.1 + 48688 0.66 0.708299
Target:  5'- cCACGCCUucAgGGCgUCGGGuuucGAGUUGCc -3'
miRNA:   3'- -GUGCGGAcuUgUCG-AGCUC----CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 12433 0.67 0.643319
Target:  5'- gGCGUCgcGGACGGCgcggUGccGAGCUGCa -3'
miRNA:   3'- gUGCGGa-CUUGUCGa---GCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 28101 0.68 0.57147
Target:  5'- gACGCCgGAGCGgaugcuuccgugcccGCUCGAcgugagcacGAGCUGCg -3'
miRNA:   3'- gUGCGGaCUUGU---------------CGAGCUc--------CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 52834 0.69 0.53513
Target:  5'- gCGCGCC-GAACAGCgCGAaugccuGCUGCg -3'
miRNA:   3'- -GUGCGGaCUUGUCGaGCUccu---CGACG- -5'
24100 3' -55.9 NC_005262.1 + 36181 0.66 0.708299
Target:  5'- gGCGCgaGuGCAGCUCGAcGGccuguucGCUGUc -3'
miRNA:   3'- gUGCGgaCuUGUCGAGCU-CCu------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 41066 0.66 0.683575
Target:  5'- uCGCGCCUccuuCGGCUCGucGAGCauccagucgauccaUGCg -3'
miRNA:   3'- -GUGCGGAcuu-GUCGAGCucCUCG--------------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.