miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 51566 0.66 0.707172
Target:  5'- uGGuCGCGCGC-GGAGCu---UGAGCGc -3'
miRNA:   3'- gUC-GUGCGCGuCCUCGcuuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 44942 0.66 0.707172
Target:  5'- aCAGCcccgaGCGuCAGGAGCagauggccgccGAGGCGAGgGc -3'
miRNA:   3'- -GUCGug---CGC-GUCCUCG-----------CUUUGCUCgC- -5'
24100 5' -56.5 NC_005262.1 + 43446 0.66 0.707172
Target:  5'- aCGGCgACGCGCuuGuGCGGAuCGAGuCGa -3'
miRNA:   3'- -GUCG-UGCGCGucCuCGCUUuGCUC-GC- -5'
24100 5' -56.5 NC_005262.1 + 52041 0.66 0.707172
Target:  5'- gGGC-CGCGCcaguuguucgAGGAagaucGCGAAGcCGAGCa -3'
miRNA:   3'- gUCGuGCGCG----------UCCU-----CGCUUU-GCUCGc -5'
24100 5' -56.5 NC_005262.1 + 52242 0.66 0.703989
Target:  5'- gCAGCGCGCGUgaugcacuucagccGGcGAGCGGc-CGAGUc -3'
miRNA:   3'- -GUCGUGCGCG--------------UC-CUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 28992 0.66 0.702927
Target:  5'- gCAGCACgGCGagaAGGAGCucagccucauCGAGCa -3'
miRNA:   3'- -GUCGUG-CGCg--UCCUCGcuuu------GCUCGc -5'
24100 5' -56.5 NC_005262.1 + 62901 0.66 0.7008
Target:  5'- cCAGCGCGCcgacgaGCuGGcGCGcaaucucauggcaaaGGACGAGCGc -3'
miRNA:   3'- -GUCGUGCG------CGuCCuCGC---------------UUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 49311 0.66 0.696539
Target:  5'- cCAGCAguucaagGCGCAGG-GCauGAccGACGAGCa -3'
miRNA:   3'- -GUCGUg------CGCGUCCuCG--CU--UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 55416 0.66 0.685846
Target:  5'- gCAGCucgaGCGCcggcuGGAgGCGAAACaGGGCa -3'
miRNA:   3'- -GUCGug--CGCGu----CCU-CGCUUUG-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 50447 0.66 0.685846
Target:  5'- uGGCGCaGCGCuucgagAGGGGUGAu-CGGGCc -3'
miRNA:   3'- gUCGUG-CGCG------UCCUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 59055 0.66 0.685846
Target:  5'- uGGCGcCG-GCAGGAGCu---CGAGCa -3'
miRNA:   3'- gUCGU-GCgCGUCCUCGcuuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 21005 0.66 0.685846
Target:  5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3'
miRNA:   3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 36120 0.66 0.685846
Target:  5'- -cGCuGCGCGauacGGCGAGGCGAGCa -3'
miRNA:   3'- guCG-UGCGCguccUCGCUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13708 0.66 0.675103
Target:  5'- -cGCGCgGCGCGGGuuCGGucGGCGcAGCGg -3'
miRNA:   3'- guCGUG-CGCGUCCucGCU--UUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 21332 0.66 0.675103
Target:  5'- -cGCACGUcCAGGAgGCGAu-CGAGgCGg -3'
miRNA:   3'- guCGUGCGcGUCCU-CGCUuuGCUC-GC- -5'
24100 5' -56.5 NC_005262.1 + 54039 0.66 0.675103
Target:  5'- aCAGCACcaucgaGCGCAcGGGCGAcGACG-GCa -3'
miRNA:   3'- -GUCGUG------CGCGUcCUCGCU-UUGCuCGc -5'
24100 5' -56.5 NC_005262.1 + 36276 0.66 0.66432
Target:  5'- uCGGUGCGCGCGGGcaCGAGcUGGGUGc -3'
miRNA:   3'- -GUCGUGCGCGUCCucGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 4806 0.66 0.66432
Target:  5'- aAGCGCgacgGCGCGGGAggcGUGAGGCcgccGGCGg -3'
miRNA:   3'- gUCGUG----CGCGUCCU---CGCUUUGc---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 28414 0.66 0.66432
Target:  5'- gCGGCACGUGCucGAGguCGAAuCGGGCc -3'
miRNA:   3'- -GUCGUGCGCGucCUC--GCUUuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 35237 0.66 0.66324
Target:  5'- -cGCGCGCGCGGcGgaagccccagauaGGCGuGAACGGGUa -3'
miRNA:   3'- guCGUGCGCGUC-C-------------UCGC-UUUGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.