miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 62708 0.69 0.516748
Target:  5'- aCGAUgGGuaauCGCGCAcGCACCCuGAUCg -3'
miRNA:   3'- -GCUAgUCc---GCGCGUaCGUGGG-CUAGg -5'
24103 5' -56.6 NC_005262.1 + 62109 0.7 0.437643
Target:  5'- uGAccUCaAGGCGCGCAUGgACugggCCGaAUCCa -3'
miRNA:   3'- gCU--AG-UCCGCGCGUACgUG----GGC-UAGG- -5'
24103 5' -56.6 NC_005262.1 + 61698 0.68 0.568991
Target:  5'- aCGAUCAgGGCGCGCcgGguuCGCUCGGcgcgcUCUg -3'
miRNA:   3'- -GCUAGU-CCGCGCGuaC---GUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 59976 1.11 0.000654
Target:  5'- uCGAUCAGGCGCGCAUGCACCCGAUCCu -3'
miRNA:   3'- -GCUAGUCCGCGCGUACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 58947 0.72 0.341229
Target:  5'- uCGGUC-GGCGCGCA-GCAgUCGAaCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGUaCGUgGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 58758 0.66 0.707873
Target:  5'- cCGAUCAGGCGCcgGCcgGCgagcaacugccGCUgGAggcagCCg -3'
miRNA:   3'- -GCUAGUCCGCG--CGuaCG-----------UGGgCUa----GG- -5'
24103 5' -56.6 NC_005262.1 + 58649 0.69 0.496379
Target:  5'- gCGGcCGGGCGCGCGaGUucuacgaucaaGCCCGAgCCc -3'
miRNA:   3'- -GCUaGUCCGCGCGUaCG-----------UGGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 58604 0.69 0.50652
Target:  5'- uCGGUCGcgccGGcCGCGCccGCGCCCGcgacgCCg -3'
miRNA:   3'- -GCUAGU----CC-GCGCGuaCGUGGGCua---GG- -5'
24103 5' -56.6 NC_005262.1 + 58080 0.69 0.526023
Target:  5'- aGGUCaAGGUGCGCGacgGCaacaaccGCCUGAUCg -3'
miRNA:   3'- gCUAG-UCCGCGCGUa--CG-------UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 57924 0.66 0.675019
Target:  5'- uCGAUCGcuucauccgcacGGUGCugaccaGCGUGCAgaugaacCCCGAUCUg -3'
miRNA:   3'- -GCUAGU------------CCGCG------CGUACGU-------GGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 56922 0.75 0.248332
Target:  5'- aGAUCaAGGcCGCGCucgagaagcGCACgCCGAUCCg -3'
miRNA:   3'- gCUAG-UCC-GCGCGua-------CGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 56007 0.66 0.697334
Target:  5'- gCGcUCGaGCaGCGCAU-CACCgCGAUCCg -3'
miRNA:   3'- -GCuAGUcCG-CGCGUAcGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 55029 0.74 0.254668
Target:  5'- uCGAUCAagccGGUGUcccacGCAUGCuuuauguuGCCCGAUCCg -3'
miRNA:   3'- -GCUAGU----CCGCG-----CGUACG--------UGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 54296 0.66 0.707873
Target:  5'- gCGGUCGGGC-CGCAaaucGCACCaguGGUgCg -3'
miRNA:   3'- -GCUAGUCCGcGCGUa---CGUGGg--CUAgG- -5'
24103 5' -56.6 NC_005262.1 + 53697 0.71 0.409806
Target:  5'- ---cCGGGCGCGCAga-ACCCGG-CCg -3'
miRNA:   3'- gcuaGUCCGCGCGUacgUGGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 53368 0.7 0.466533
Target:  5'- uGAUC-GGCGC-CAUGCGCCUG--CCg -3'
miRNA:   3'- gCUAGuCCGCGcGUACGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 51959 0.69 0.50652
Target:  5'- cCGcUCGcGCGCGCcUGCGCUCGAaacugUCCg -3'
miRNA:   3'- -GCuAGUcCGCGCGuACGUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 51679 0.7 0.455823
Target:  5'- gCGAUCugcucGCGCGCAcggcggcgcugauUGCGCCCGAa-- -3'
miRNA:   3'- -GCUAGuc---CGCGCGU-------------ACGUGGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 50655 0.68 0.568991
Target:  5'- cCGcgCAGcGCGCGCGgcggaccuaauUGUGCCaCGGUUCg -3'
miRNA:   3'- -GCuaGUC-CGCGCGU-----------ACGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 50254 0.67 0.640718
Target:  5'- aGAUCgaccgccgcaacgaGGGCGCGCccGCGCCggcCGAgCCc -3'
miRNA:   3'- gCUAG--------------UCCGCGCGuaCGUGG---GCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.