miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 10859 0.66 0.695905
Target:  5'- gGCGAagcccAGGcggCGCaGGCCGUcguAGAUCGa -3'
miRNA:   3'- -CGCU-----UCCa--GCGgCCGGCGu--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 58340 0.66 0.695905
Target:  5'- gGCGAGGuUCGCCGcgaggucauGCCGCGccgGGAcaUCGa -3'
miRNA:   3'- -CGCUUCcAGCGGC---------CGGCGU---UCU--AGCa -5'
24104 5' -57.1 NC_005262.1 + 29512 0.66 0.695905
Target:  5'- cGCGAGGG-CGUCGguGCCGUcaAGGAUgCGa -3'
miRNA:   3'- -CGCUUCCaGCGGC--CGGCG--UUCUA-GCa -5'
24104 5' -57.1 NC_005262.1 + 50427 0.66 0.695905
Target:  5'- cGCGAGGGccgcgugcacgUCGUCGuGCCGCGcgaGGAggaCGg -3'
miRNA:   3'- -CGCUUCC-----------AGCGGC-CGGCGU---UCUa--GCa -5'
24104 5' -57.1 NC_005262.1 + 29436 0.66 0.695905
Target:  5'- gGCGAAGGccCGCaaGGCUGCGgcagaggcgcAGGUCGc -3'
miRNA:   3'- -CGCUUCCa-GCGg-CCGGCGU----------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 61419 0.66 0.685336
Target:  5'- gGCGAAGG-CGgCGGCCG-AGGAa--- -3'
miRNA:   3'- -CGCUUCCaGCgGCCGGCgUUCUagca -5'
24104 5' -57.1 NC_005262.1 + 24215 0.66 0.684276
Target:  5'- cGCGAcGcugCGCCGGCaCGCcgauugguugaguAAGAUCGg -3'
miRNA:   3'- -CGCUuCca-GCGGCCG-GCG-------------UUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 21685 0.66 0.675782
Target:  5'- aGCGgcGG-CGCCGcGCUGCuguacgcgggcacgcAGAUCGg -3'
miRNA:   3'- -CGCuuCCaGCGGC-CGGCGu--------------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 54424 0.66 0.674718
Target:  5'- cGCGGAGG-CGCaGGCCGCcgcGcgCGc -3'
miRNA:   3'- -CGCUUCCaGCGgCCGGCGuu-CuaGCa -5'
24104 5' -57.1 NC_005262.1 + 31475 0.66 0.671526
Target:  5'- aGCGuuGGUcCGCCGaccucgccgucgacGuCCGCAAGAagUCGUa -3'
miRNA:   3'- -CGCuuCCA-GCGGC--------------C-GGCGUUCU--AGCA- -5'
24104 5' -57.1 NC_005262.1 + 21578 0.66 0.664063
Target:  5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3'
miRNA:   3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5'
24104 5' -57.1 NC_005262.1 + 29181 0.66 0.664063
Target:  5'- gGCGGccGUCGCCGaGCUGaugGAGGUCa- -3'
miRNA:   3'- -CGCUucCAGCGGC-CGGCg--UUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 22421 0.66 0.664063
Target:  5'- cGCGuAGGUCaGCCGuGCCGU----UCGUg -3'
miRNA:   3'- -CGCuUCCAG-CGGC-CGGCGuucuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 42422 0.66 0.653379
Target:  5'- gGCGgcGccaGCCGGCCGCAAcAUCa- -3'
miRNA:   3'- -CGCuuCcagCGGCCGGCGUUcUAGca -5'
24104 5' -57.1 NC_005262.1 + 4824 0.66 0.653379
Target:  5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3'
miRNA:   3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5'
24104 5' -57.1 NC_005262.1 + 49860 0.66 0.643748
Target:  5'- gGCGgcGGUaccggaagcagcucaGCCGGCCGgAAacGGUCGa -3'
miRNA:   3'- -CGCuuCCAg--------------CGGCCGGCgUU--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 6377 0.66 0.642677
Target:  5'- cCGGAGcGUUGUCGGCCGCcuucUCGg -3'
miRNA:   3'- cGCUUC-CAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 9681 0.66 0.642677
Target:  5'- gGCGAGGG-CGCCgucgacgucgaGGCgcaGCAgcGGGUCGUu -3'
miRNA:   3'- -CGCUUCCaGCGG-----------CCGg--CGU--UCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 13687 0.66 0.642677
Target:  5'- cGCGcgcGGU-GCUGGCgCGUGAGGUCGa -3'
miRNA:   3'- -CGCuu-CCAgCGGCCG-GCGUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 36898 0.66 0.642677
Target:  5'- cGCGGAugaucgacaacGGacgCGCCGGCCaCucGAUCGUg -3'
miRNA:   3'- -CGCUU-----------CCa--GCGGCCGGcGuuCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.