Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24104 | 5' | -57.1 | NC_005262.1 | + | 61419 | 0.66 | 0.685336 |
Target: 5'- gGCGAAGG-CGgCGGCCG-AGGAa--- -3' miRNA: 3'- -CGCUUCCaGCgGCCGGCgUUCUagca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 60379 | 1.08 | 0.000977 |
Target: 5'- gGCGAAGGUCGCCGGCCGCAAGAUCGUc -3' miRNA: 3'- -CGCUUCCAGCGGCCGGCGUUCUAGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 60203 | 0.73 | 0.302832 |
Target: 5'- gGC-AAGGa-GCCGGCCgGCGAGGUCGg -3' miRNA: 3'- -CGcUUCCagCGGCCGG-CGUUCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 58340 | 0.66 | 0.695905 |
Target: 5'- gGCGAGGuUCGCCGcgaggucauGCCGCGccgGGAcaUCGa -3' miRNA: 3'- -CGCUUCcAGCGGC---------CGGCGU---UCU--AGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 57812 | 0.67 | 0.631966 |
Target: 5'- cGgGAAGGcaUUGCCGGCuauCGCAcGAUCa- -3' miRNA: 3'- -CgCUUCC--AGCGGCCG---GCGUuCUAGca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 57473 | 0.69 | 0.515971 |
Target: 5'- aUGGAGGUCgagggcgagaaGCCGGCCGaCGAGG-CGc -3' miRNA: 3'- cGCUUCCAG-----------CGGCCGGC-GUUCUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 55942 | 0.71 | 0.400472 |
Target: 5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3' miRNA: 3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 55802 | 0.68 | 0.568004 |
Target: 5'- aGCaGAAcGcCGCCGGCgGCuacGAGGUCGUg -3' miRNA: 3'- -CG-CUUcCaGCGGCCGgCG---UUCUAGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 54424 | 0.66 | 0.674718 |
Target: 5'- cGCGGAGG-CGCaGGCCGCcgcGcgCGc -3' miRNA: 3'- -CGCUUCCaGCGgCCGGCGuu-CuaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 53080 | 0.67 | 0.578586 |
Target: 5'- uGCGGGaG-CGCCGGCCGCGuGcgCGc -3' miRNA: 3'- -CGCUUcCaGCGGCCGGCGUuCuaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 52942 | 0.7 | 0.437192 |
Target: 5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3' miRNA: 3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 52698 | 0.69 | 0.475771 |
Target: 5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3' miRNA: 3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 52128 | 0.67 | 0.621255 |
Target: 5'- cGCGAAGcUCuGCCGGCCaGCGugcAGcgCGa -3' miRNA: 3'- -CGCUUCcAG-CGGCCGG-CGU---UCuaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 51521 | 0.7 | 0.409468 |
Target: 5'- aGCucGGcUCGCCGGCCGC--GAUCGa -3' miRNA: 3'- -CGcuUCcAGCGGCCGGCGuuCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 50427 | 0.66 | 0.695905 |
Target: 5'- cGCGAGGGccgcgugcacgUCGUCGuGCCGCGcgaGGAggaCGg -3' miRNA: 3'- -CGCUUCC-----------AGCGGC-CGGCGU---UCUa--GCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 49860 | 0.66 | 0.643748 |
Target: 5'- gGCGgcGGUaccggaagcagcucaGCCGGCCGgAAacGGUCGa -3' miRNA: 3'- -CGCuuCCAg--------------CGGCCGGCgUU--CUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 49583 | 0.69 | 0.512906 |
Target: 5'- uGCaGAAGGccgacaagaaugugUCGCuCGGCCGCGAcGUCGc -3' miRNA: 3'- -CG-CUUCC--------------AGCG-GCCGGCGUUcUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 49140 | 0.68 | 0.533471 |
Target: 5'- gGCGAAGGUCGgCacggugggcgugcaGGCCGCA---UCGg -3' miRNA: 3'- -CGCUUCCAGCgG--------------CCGGCGUucuAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 48030 | 0.74 | 0.254878 |
Target: 5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3' miRNA: 3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 47736 | 0.7 | 0.418588 |
Target: 5'- ---cAGGaUCGUCGGCCGCAAG-UCGc -3' miRNA: 3'- cgcuUCC-AGCGGCCGGCGUUCuAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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