miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 58340 0.66 0.695905
Target:  5'- gGCGAGGuUCGCCGcgaggucauGCCGCGccgGGAcaUCGa -3'
miRNA:   3'- -CGCUUCcAGCGGC---------CGGCGU---UCU--AGCa -5'
24104 5' -57.1 NC_005262.1 + 53080 0.67 0.578586
Target:  5'- uGCGGGaG-CGCCGGCCGCGuGcgCGc -3'
miRNA:   3'- -CGCUUcCaGCGGCCGGCGUuCuaGCa -5'
24104 5' -57.1 NC_005262.1 + 39244 0.68 0.526238
Target:  5'- cGCGAucagcAGGaucaCGCCGGCgauCGCgAAGGUCGUc -3'
miRNA:   3'- -CGCU-----UCCa---GCGGCCG---GCG-UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 48030 0.74 0.254878
Target:  5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3'
miRNA:   3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5'
24104 5' -57.1 NC_005262.1 + 4824 0.66 0.653379
Target:  5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3'
miRNA:   3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5'
24104 5' -57.1 NC_005262.1 + 6377 0.66 0.642677
Target:  5'- cCGGAGcGUUGUCGGCCGCcuucUCGg -3'
miRNA:   3'- cGCUUC-CAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 9681 0.66 0.642677
Target:  5'- gGCGAGGG-CGCCgucgacgucgaGGCgcaGCAgcGGGUCGUu -3'
miRNA:   3'- -CGCUUCCaGCGG-----------CCGg--CGU--UCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 23142 0.67 0.631966
Target:  5'- cGUGGgucGGGUCGCUGacGCCGUgcccguggccGGGGUCGUu -3'
miRNA:   3'- -CGCU---UCCAGCGGC--CGGCG----------UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 10634 0.67 0.621255
Target:  5'- cGCGAagggcGGGUUGCCGaucGCCGCGucgaAGAacUCGc -3'
miRNA:   3'- -CGCU-----UCCAGCGGC---CGGCGU----UCU--AGCa -5'
24104 5' -57.1 NC_005262.1 + 9783 0.67 0.58921
Target:  5'- gGCGAgcAGGUUGCCGugcuucGCCGUgaAGGcGUCGUa -3'
miRNA:   3'- -CGCU--UCCAGCGGC------CGGCG--UUC-UAGCA- -5'
24104 5' -57.1 NC_005262.1 + 18536 0.67 0.610553
Target:  5'- cGCGuucgacgcuccGAGGUUGCCGGUCGcCGAGuugccggCGUu -3'
miRNA:   3'- -CGC-----------UUCCAGCGGCCGGC-GUUCua-----GCA- -5'
24104 5' -57.1 NC_005262.1 + 52128 0.67 0.621255
Target:  5'- cGCGAAGcUCuGCCGGCCaGCGugcAGcgCGa -3'
miRNA:   3'- -CGCUUCcAG-CGGCCGG-CGU---UCuaGCa -5'
24104 5' -57.1 NC_005262.1 + 10859 0.66 0.695905
Target:  5'- gGCGAagcccAGGcggCGCaGGCCGUcguAGAUCGa -3'
miRNA:   3'- -CGCU-----UCCa--GCGgCCGGCGu--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 41667 0.67 0.610553
Target:  5'- cGCGgcGGccagacgaUUGCCGGCCacguGCAgcAGGUCGa -3'
miRNA:   3'- -CGCuuCC--------AGCGGCCGG----CGU--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 22421 0.66 0.664063
Target:  5'- cGCGuAGGUCaGCCGuGCCGU----UCGUg -3'
miRNA:   3'- -CGCuUCCAG-CGGC-CGGCGuucuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 12789 0.67 0.631966
Target:  5'- gGCGc-GGUCGCCGGUCGCuuccUUGg -3'
miRNA:   3'- -CGCuuCCAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 30211 0.67 0.596668
Target:  5'- uGCGguGGccucgaucgugaucUCGCCGGCCuCGAGcUCGUc -3'
miRNA:   3'- -CGCuuCC--------------AGCGGCCGGcGUUCuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 31438 0.68 0.568004
Target:  5'- aGCGGAGGcCGuuGGCCGUgccguaggcGAUCa- -3'
miRNA:   3'- -CGCUUCCaGCggCCGGCGuu-------CUAGca -5'
24104 5' -57.1 NC_005262.1 + 21578 0.66 0.664063
Target:  5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3'
miRNA:   3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5'
24104 5' -57.1 NC_005262.1 + 36898 0.66 0.642677
Target:  5'- cGCGGAugaucgacaacGGacgCGCCGGCCaCucGAUCGUg -3'
miRNA:   3'- -CGCUU-----------CCa--GCGGCCGGcGuuCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.