miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 63655 0.68 0.226679
Target:  5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3'
miRNA:   3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 63075 0.74 0.083843
Target:  5'- cGCGGGCGAGUaugcGGCGGcGUGCaaGGCg -3'
miRNA:   3'- cCGCCCGCUCGa---CUGCC-CGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 62511 0.66 0.337051
Target:  5'- cGGgGGGCGuccuGCUGGCGaaaaucgccGGCcuuuGgGCGGUu -3'
miRNA:   3'- -CCgCCCGCu---CGACUGC---------CCG----CgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 62319 0.68 0.255557
Target:  5'- aGCGGcaGCGccGGCaGACGaGCGgGCGGCg -3'
miRNA:   3'- cCGCC--CGC--UCGaCUGCcCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 61643 0.66 0.337051
Target:  5'- --aGGGCGAGgaGGaagugcuguacCGcGGCGCGCuggaGGCg -3'
miRNA:   3'- ccgCCCGCUCgaCU-----------GC-CCGCGCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 61460 0.66 0.337051
Target:  5'- cGGCGGacgGCGAagcGCUaGACGacaucuuCGCGCGGCc -3'
miRNA:   3'- -CCGCC---CGCU---CGA-CUGCcc-----GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 61166 1.13 0.000093
Target:  5'- cGGCGGGCGAGCUGACGGGCGCGCGGCg -3'
miRNA:   3'- -CCGCCCGCUCGACUGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60684 0.72 0.134066
Target:  5'- uGCuGGCGAcGCUGggcuucuucGCGGGCGCGuCGGg -3'
miRNA:   3'- cCGcCCGCU-CGAC---------UGCCCGCGC-GCCg -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 60555 0.68 0.226679
Target:  5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3'
miRNA:   3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60492 0.75 0.081655
Target:  5'- --aGGGCGAGacgcCGGGcCGCGCGGCg -3'
miRNA:   3'- ccgCCCGCUCgacuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 59062 0.7 0.168527
Target:  5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3'
miRNA:   3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5'
24105 3' -64.8 NC_005262.1 + 58639 0.7 0.168527
Target:  5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3'
miRNA:   3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 58563 0.66 0.315029
Target:  5'- aGGC-GGCGAgaaGCUGAUcGGCaCGcCGGCa -3'
miRNA:   3'- -CCGcCCGCU---CGACUGcCCGcGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 57518 0.73 0.101851
Target:  5'- cGGCGaaGGcCGAGCUGcugaccaucaucgagGCGGcaaagaccguGCGCGCGGCg -3'
miRNA:   3'- -CCGC--CC-GCUCGAC---------------UGCC----------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 56959 0.83 0.017025
Target:  5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3'
miRNA:   3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 54101 0.66 0.329588
Target:  5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3'
miRNA:   3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 53819 0.74 0.090745
Target:  5'- cGGCacGGGCaucGAGCUGACGcaccggcgcGGCGCGgaCGGCa -3'
miRNA:   3'- -CCG--CCCG---CUCGACUGC---------CCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 53767 0.7 0.181676
Target:  5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3'
miRNA:   3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.