miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 5' -50.7 NC_005262.1 + 28959 0.66 0.96527
Target:  5'- -----cUCGCG-CGCGAGGAAGuCGGg -3'
miRNA:   3'- ccuuaaGGUGCaGCGCUUCUUCcGCC- -5'
24106 5' -50.7 NC_005262.1 + 14289 0.66 0.96527
Target:  5'- cGAAcuguaGCGUUGCGuggacGGGAGGGCGGc -3'
miRNA:   3'- cCUUaagg-UGCAGCGC-----UUCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 26188 0.66 0.961641
Target:  5'- uGGAAUUUCAgGaUGuCGAcaGAGGCGGu -3'
miRNA:   3'- -CCUUAAGGUgCaGC-GCUucUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 62557 0.66 0.961641
Target:  5'- gGGGAUcacgUCCugGUCG-GAGGc-GGCGa -3'
miRNA:   3'- -CCUUA----AGGugCAGCgCUUCuuCCGCc -5'
24106 5' -50.7 NC_005262.1 + 10988 0.66 0.960503
Target:  5'- gGGAAcgCCG-GUCGCGcucgcacggcugacGAGcGAGGCGGc -3'
miRNA:   3'- -CCUUaaGGUgCAGCGC--------------UUC-UUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 37866 0.66 0.957757
Target:  5'- cGGAAaagUCgGCGUCGCGcgu--GGCGa -3'
miRNA:   3'- -CCUUa--AGgUGCAGCGCuucuuCCGCc -5'
24106 5' -50.7 NC_005262.1 + 57886 0.66 0.957757
Target:  5'- ----cUCCuGCGUCGUGAAGAucGCGc -3'
miRNA:   3'- ccuuaAGG-UGCAGCGCUUCUucCGCc -5'
24106 5' -50.7 NC_005262.1 + 58685 0.66 0.953613
Target:  5'- -----cCCGCGUUGCGAgcgcgcaacaAGcuGGCGGc -3'
miRNA:   3'- ccuuaaGGUGCAGCGCU----------UCuuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 12541 0.66 0.953613
Target:  5'- ----cUCCAUGUUGCGGcggcAGGucgcGGCGGc -3'
miRNA:   3'- ccuuaAGGUGCAGCGCU----UCUu---CCGCC- -5'
24106 5' -50.7 NC_005262.1 + 8268 0.66 0.953613
Target:  5'- -----gCUGCGUCGCGAAGucGAGuuuGCGGa -3'
miRNA:   3'- ccuuaaGGUGCAGCGCUUC--UUC---CGCC- -5'
24106 5' -50.7 NC_005262.1 + 36474 0.66 0.949203
Target:  5'- ------gCGCG-CGCGAGGcuGGCGGa -3'
miRNA:   3'- ccuuaagGUGCaGCGCUUCuuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 16814 0.67 0.944522
Target:  5'- uGGAGUUCCugcACGacagcCGCGAcuucguGAAGGuCGGu -3'
miRNA:   3'- -CCUUAAGG---UGCa----GCGCUu-----CUUCC-GCC- -5'
24106 5' -50.7 NC_005262.1 + 50429 0.67 0.943065
Target:  5'- cGAGggCCGCGUgcacgucgucgugcCGCGcGAGGAGGaCGGc -3'
miRNA:   3'- cCUUaaGGUGCA--------------GCGC-UUCUUCC-GCC- -5'
24106 5' -50.7 NC_005262.1 + 17141 0.67 0.939568
Target:  5'- aGAAcgCgCGCGUCGCaaucGAGAAGGcCGGc -3'
miRNA:   3'- cCUUaaG-GUGCAGCGc---UUCUUCC-GCC- -5'
24106 5' -50.7 NC_005262.1 + 50694 0.67 0.934338
Target:  5'- -uGGUUCgGC-UCGCGcGAGAAGGCGc -3'
miRNA:   3'- ccUUAAGgUGcAGCGC-UUCUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 36411 0.67 0.92883
Target:  5'- cGAAgUCCACGuUCGCGG---AGGCGc -3'
miRNA:   3'- cCUUaAGGUGC-AGCGCUucuUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 1205 0.67 0.923044
Target:  5'- -----aCCACaUCGUGuagcAGAAGGCGGc -3'
miRNA:   3'- ccuuaaGGUGcAGCGCu---UCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 22361 0.67 0.923044
Target:  5'- ----aUCCGCGUgGUGcGGAGGGUGu -3'
miRNA:   3'- ccuuaAGGUGCAgCGCuUCUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 54566 0.67 0.923044
Target:  5'- -----gCCGCGuUCGCGAGcGAGGCGc -3'
miRNA:   3'- ccuuaaGGUGC-AGCGCUUcUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 14157 0.68 0.91698
Target:  5'- cGGGAUugUCCGcCG-CGCcGAGGAGuGCGGc -3'
miRNA:   3'- -CCUUA--AGGU-GCaGCGcUUCUUC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.