miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 40994 0.66 0.600673
Target:  5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3'
miRNA:   3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 50740 0.66 0.600673
Target:  5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3'
miRNA:   3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 48303 0.66 0.600673
Target:  5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3'
miRNA:   3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5'
24108 3' -58.5 NC_005262.1 + 36730 0.66 0.600673
Target:  5'- gGGcUGGCGCCGCGGgcgcaGUUCuGCGCa -3'
miRNA:   3'- gCCaGUCGCGGCGUCg----UAAGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 16083 0.66 0.600673
Target:  5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3'
miRNA:   3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 1999 0.66 0.59961
Target:  5'- aGG-CAuGCGCCGCGcaggcgaaaacgcGCuggucggUCGGCGCGu -3'
miRNA:   3'- gCCaGU-CGCGGCGU-------------CGua-----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 14536 0.66 0.590056
Target:  5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3'
miRNA:   3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 7530 0.66 0.590056
Target:  5'- aGGuUCGGCGgCGCG----UCGGCGCGc -3'
miRNA:   3'- gCC-AGUCGCgGCGUcguaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 24205 0.66 0.590056
Target:  5'- aGG-CGGCaGCCGCGacGCugcgcCGGCACGc -3'
miRNA:   3'- gCCaGUCG-CGGCGU--CGuaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12502 0.66 0.590056
Target:  5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3'
miRNA:   3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 52140 0.66 0.590056
Target:  5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3'
miRNA:   3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 33320 0.66 0.588996
Target:  5'- aGGauuUCGGCGCCGUcgauguuGGCGUUcucCGGCuucGCGg -3'
miRNA:   3'- gCC---AGUCGCGGCG-------UCGUAA---GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 50846 0.66 0.588996
Target:  5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3'
miRNA:   3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46115 0.66 0.579474
Target:  5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 40295 0.66 0.568932
Target:  5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3'
miRNA:   3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 46907 0.66 0.568932
Target:  5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3'
miRNA:   3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 15145 0.66 0.558438
Target:  5'- gCGGcCGGCGUCGag----UCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCgucguaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20094 0.66 0.558438
Target:  5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3'
miRNA:   3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 22572 0.67 0.548
Target:  5'- cCGGccUUAGCgGCCGCAuGCg--CGGCGCu -3'
miRNA:   3'- -GCC--AGUCG-CGGCGU-CGuaaGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.