miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24109 5' -52.8 NC_005262.1 + 57337 0.66 0.894521
Target:  5'- gCGUcGAuGCCGgcgucucgCCgGAGCCGAACUa- -3'
miRNA:   3'- gGUA-CUuCGGCa-------GG-CUCGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 59051 0.66 0.894521
Target:  5'- uCCGUGgcGCCGgCagGAGCuCGAGCa-- -3'
miRNA:   3'- -GGUACuuCGGCaGg-CUCG-GCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 43667 0.66 0.893809
Target:  5'- aCGUGGcgaccugaacgcaAGCCaagCCGGGCCGAAUUc- -3'
miRNA:   3'- gGUACU-------------UCGGca-GGCUCGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 21782 0.66 0.887286
Target:  5'- -gGUGAGGCCGcccgaUUCGAGgCGGGCg-- -3'
miRNA:   3'- ggUACUUCGGC-----AGGCUCgGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 25568 0.66 0.887286
Target:  5'- aCCAgacgGcAGCCGUCUGcGCCGGGgUa- -3'
miRNA:   3'- -GGUa---CuUCGGCAGGCuCGGCUUgAac -5'
24109 5' -52.8 NC_005262.1 + 29170 0.66 0.887286
Target:  5'- aCCAUGcgucAGGCgG-CCGucGCCGAGCUg- -3'
miRNA:   3'- -GGUAC----UUCGgCaGGCu-CGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 60815 0.66 0.87979
Target:  5'- gCAcgGAGGCCGauugcCCGAuGCCGGGCa-- -3'
miRNA:   3'- gGUa-CUUCGGCa----GGCU-CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 60299 0.66 0.87979
Target:  5'- aCCGU-AAGCCGaUCCGcGUCGGGCg-- -3'
miRNA:   3'- -GGUAcUUCGGC-AGGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 31920 0.66 0.86404
Target:  5'- cCCGUGAAGUcgggCGUUCGAugaaGUCGAGgUUGa -3'
miRNA:   3'- -GGUACUUCG----GCAGGCU----CGGCUUgAAC- -5'
24109 5' -52.8 NC_005262.1 + 33578 0.66 0.86404
Target:  5'- gCCGUGAuGUCG-CCGuuGUCGAACUg- -3'
miRNA:   3'- -GGUACUuCGGCaGGCu-CGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 3027 0.67 0.855798
Target:  5'- uCCGgcgGAAGCCGU-UGAGCCGGc---- -3'
miRNA:   3'- -GGUa--CUUCGGCAgGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 31106 0.67 0.855798
Target:  5'- cCCAccugGAGGCCGgcggCCGgcAGCgCGAACUc- -3'
miRNA:   3'- -GGUa---CUUCGGCa---GGC--UCG-GCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 30095 0.67 0.847323
Target:  5'- uUCAUGuuggcGGCCGggaCCuuGCCGAAUUUGg -3'
miRNA:   3'- -GGUACu----UCGGCa--GGcuCGGCUUGAAC- -5'
24109 5' -52.8 NC_005262.1 + 3955 0.67 0.847323
Target:  5'- aCGcGAucGCCGUuuGAGUCGAGCa-- -3'
miRNA:   3'- gGUaCUu-CGGCAggCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 42368 0.67 0.83862
Target:  5'- aCCAgcucgcgGAcgucGGCCGUCgCGAGCuCGGACc-- -3'
miRNA:   3'- -GGUa------CU----UCGGCAG-GCUCG-GCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 61376 0.67 0.83862
Target:  5'- aCGUGAAGCCGcUgCGcAGCCGcuACUa- -3'
miRNA:   3'- gGUACUUCGGC-AgGC-UCGGCu-UGAac -5'
24109 5' -52.8 NC_005262.1 + 6717 0.67 0.829701
Target:  5'- uCCAUGAuGCCGggcCCGugcuuGUCGAACa-- -3'
miRNA:   3'- -GGUACUuCGGCa--GGCu----CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 9805 0.67 0.829701
Target:  5'- gCCGUGAAGgCGUCguaGGcaucGCCGAGCg-- -3'
miRNA:   3'- -GGUACUUCgGCAGg--CU----CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 11402 0.67 0.811248
Target:  5'- uCCAcgccGAAGCCGcgCCGcGCCGGGCc-- -3'
miRNA:   3'- -GGUa---CUUCGGCa-GGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 34809 0.67 0.811248
Target:  5'- gCCuc-AAGCCGUCCGAggauGCCGAucaGCUc- -3'
miRNA:   3'- -GGuacUUCGGCAGGCU----CGGCU---UGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.