miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24111 5' -51.3 NC_005263.2 + 3604 0.66 0.9196
Target:  5'- -gGUGACGGCCAggaugccgcCGUCGGucaGGUAgGc -3'
miRNA:   3'- cgCACUGCUGGU---------GUAGCUug-CCAUgC- -5'
24111 5' -51.3 NC_005263.2 + 25430 0.66 0.9196
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGcACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 8954 0.66 0.906688
Target:  5'- cCGUGuCGAgCaACGUCGccgacACGGUGCGc -3'
miRNA:   3'- cGCACuGCUgG-UGUAGCu----UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 30409 0.66 0.906688
Target:  5'- aGCGcGAcCGGCUGCAgcaGGuCGGUGCGg -3'
miRNA:   3'- -CGCaCU-GCUGGUGUag-CUuGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 20947 0.66 0.899808
Target:  5'- gGUGaUGACGGCCGCgcgcuGUCGGacaucgccgacGCGGcUGCGc -3'
miRNA:   3'- -CGC-ACUGCUGGUG-----UAGCU-----------UGCC-AUGC- -5'
24111 5' -51.3 NC_005263.2 + 27776 0.66 0.899808
Target:  5'- uGCGgcGGCaGGCCAUgcuUCGcGCGGUACa -3'
miRNA:   3'- -CGCa-CUG-CUGGUGu--AGCuUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 18456 0.66 0.89265
Target:  5'- cGCGUGAagcaGCCGCG-CGGcUGGUACa -3'
miRNA:   3'- -CGCACUgc--UGGUGUaGCUuGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 7085 0.66 0.89265
Target:  5'- uCGUcGACGAgCACgaaGUCGAACGGccCGa -3'
miRNA:   3'- cGCA-CUGCUgGUG---UAGCUUGCCauGC- -5'
24111 5' -51.3 NC_005263.2 + 655 0.66 0.89265
Target:  5'- aCGUGcCGGCCAgAUCGAACGccuCa -3'
miRNA:   3'- cGCACuGCUGGUgUAGCUUGCcauGc -5'
24111 5' -51.3 NC_005263.2 + 4417 0.66 0.89265
Target:  5'- cGUGUGACGGCUcccaauccucguACGUCaccucauuGAACaGUGCGa -3'
miRNA:   3'- -CGCACUGCUGG------------UGUAG--------CUUGcCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 4743 0.66 0.89265
Target:  5'- cGCGaGcACGccagcuuucACCgACAUCGAACGGUAuCGa -3'
miRNA:   3'- -CGCaC-UGC---------UGG-UGUAGCUUGCCAU-GC- -5'
24111 5' -51.3 NC_005263.2 + 27344 0.66 0.891919
Target:  5'- aGCGgcGCGGCCAUGUuacaggccgccagCGAGCGGcGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUA-------------GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 22533 0.67 0.885219
Target:  5'- aGCGUGACgGGCgGCG-CGGACGccgACGu -3'
miRNA:   3'- -CGCACUG-CUGgUGUaGCUUGCca-UGC- -5'
24111 5' -51.3 NC_005263.2 + 29828 0.67 0.877519
Target:  5'- cGCGcacGACGAgCGCAUCGccCGGaACGc -3'
miRNA:   3'- -CGCa--CUGCUgGUGUAGCuuGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 23922 0.67 0.876735
Target:  5'- aGCGUGaccgucgcuuugGCGGCUugcGCGUCGugagcguGACGGUGCc -3'
miRNA:   3'- -CGCAC------------UGCUGG---UGUAGC-------UUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 34378 0.67 0.861341
Target:  5'- gGCGguaacgccGCGAgCACGUCGGACGGcgACc -3'
miRNA:   3'- -CGCac------UGCUgGUGUAGCUUGCCa-UGc -5'
24111 5' -51.3 NC_005263.2 + 24787 0.67 0.852876
Target:  5'- gGCGUcGGCGGCUcgccggGCGUCG-GCGGcGCGu -3'
miRNA:   3'- -CGCA-CUGCUGG------UGUAGCuUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 39463 0.67 0.852876
Target:  5'- --cUGACGACCuACGUCGAcccguCGGUGa- -3'
miRNA:   3'- cgcACUGCUGG-UGUAGCUu----GCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 6472 0.67 0.85029
Target:  5'- aGCGcGugGGCCGCAgugcaaccaggcagUCGAcgaACGGcGCGu -3'
miRNA:   3'- -CGCaCugCUGGUGU--------------AGCU---UGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 3437 0.68 0.844171
Target:  5'- cCGUcGCGACCugGUUGAccuGCGcGUGCa -3'
miRNA:   3'- cGCAcUGCUGGugUAGCU---UGC-CAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.