miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 45807 0.66 0.701563
Target:  5'- aCGCGGGcGuGCCGGCCAcGGCGC-ACGa -3'
miRNA:   3'- -GCGUUU-C-CGGCUGGUcUUGCGcUGCa -5'
24118 3' -55.4 NC_005263.2 + 12724 0.66 0.701563
Target:  5'- aGCAAAGGCgGcgcuaACUGGcACuGCGACGUc -3'
miRNA:   3'- gCGUUUCCGgC-----UGGUCuUG-CGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 24021 0.66 0.690674
Target:  5'- aGCcGccGCCGGCCGGAuCGguCGACGUg -3'
miRNA:   3'- gCGuUucCGGCUGGUCUuGC--GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 14033 0.66 0.690674
Target:  5'- gGCGAcGGuUCGGCCAcGGGCGCcGCGUc -3'
miRNA:   3'- gCGUUuCC-GGCUGGU-CUUGCGcUGCA- -5'
24118 3' -55.4 NC_005263.2 + 38490 0.66 0.690674
Target:  5'- cCGCGAGGcGCUcACgCAGAucgGCGuCGACGUg -3'
miRNA:   3'- -GCGUUUC-CGGcUG-GUCU---UGC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 8962 0.66 0.679728
Target:  5'- aGCAAcgucGCCGACaCGGuGCGcCGACGUu -3'
miRNA:   3'- gCGUUuc--CGGCUG-GUCuUGC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 41970 0.66 0.679728
Target:  5'- aGCGAGGGCUGcggguACCuGAACGacgccgagcacaUGACGUg -3'
miRNA:   3'- gCGUUUCCGGC-----UGGuCUUGC------------GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 30554 0.66 0.668736
Target:  5'- aCGCuGAGGGCaccaGACCGGAuuCGCGcACa- -3'
miRNA:   3'- -GCG-UUUCCGg---CUGGUCUu-GCGC-UGca -5'
24118 3' -55.4 NC_005263.2 + 39705 0.66 0.668736
Target:  5'- gCGCGAGcuggaaauGGCCGGCgCGGGcCGCGuCGa -3'
miRNA:   3'- -GCGUUU--------CCGGCUG-GUCUuGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 40118 0.66 0.668736
Target:  5'- gGCAucGGGCCGACUcgugcagcucuGGGCGCcGCGUg -3'
miRNA:   3'- gCGUu-UCCGGCUGGu----------CUUGCGcUGCA- -5'
24118 3' -55.4 NC_005263.2 + 19032 0.66 0.668736
Target:  5'- aGCGAcGGCCGAugcgcgccgccCCgAGGACGCGcCGc -3'
miRNA:   3'- gCGUUuCCGGCU-----------GG-UCUUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 9555 0.66 0.65771
Target:  5'- uCGCAcAGGUCGACaaAGAACGUGuccaggcgcuGCGUg -3'
miRNA:   3'- -GCGUuUCCGGCUGg-UCUUGCGC----------UGCA- -5'
24118 3' -55.4 NC_005263.2 + 23378 0.66 0.65771
Target:  5'- uCGUGAAGGCUG-CCGcGAacaucGCGCGAUGc -3'
miRNA:   3'- -GCGUUUCCGGCuGGU-CU-----UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 3193 0.66 0.65771
Target:  5'- aGCAcGAGGCCGgugaGCCGGcccGGCGCGcCGc -3'
miRNA:   3'- gCGU-UUCCGGC----UGGUC---UUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 34700 0.66 0.65771
Target:  5'- gGCGccGGCCGuggucugcaaACCAuuGGGCGUGGCGa -3'
miRNA:   3'- gCGUuuCCGGC----------UGGU--CUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 45840 0.66 0.65771
Target:  5'- cCGCAAccuuGGCCGAgC---GCGCGGCGc -3'
miRNA:   3'- -GCGUUu---CCGGCUgGucuUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 35960 0.66 0.64666
Target:  5'- aGCGAacAGGCCGAagucagucgUCAuGAGCGCGAUc- -3'
miRNA:   3'- gCGUU--UCCGGCU---------GGU-CUUGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 23126 0.66 0.64666
Target:  5'- uGCGGccAGGCCGGCCAGcauCGUGuugcCGa -3'
miRNA:   3'- gCGUU--UCCGGCUGGUCuu-GCGCu---GCa -5'
24118 3' -55.4 NC_005263.2 + 30620 0.66 0.64666
Target:  5'- aCGCGccGcGCgCGAUCAGGGCGUucauGACGUa -3'
miRNA:   3'- -GCGUuuC-CG-GCUGGUCUUGCG----CUGCA- -5'
24118 3' -55.4 NC_005263.2 + 45257 0.66 0.64666
Target:  5'- gGCGGgcGGGCCGGCCcgcauucGAACG-GugGUg -3'
miRNA:   3'- gCGUU--UCCGGCUGGu------CUUGCgCugCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.