Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24118 | 3' | -55.4 | NC_005263.2 | + | 45807 | 0.66 | 0.701563 |
Target: 5'- aCGCGGGcGuGCCGGCCAcGGCGC-ACGa -3' miRNA: 3'- -GCGUUU-C-CGGCUGGUcUUGCGcUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 12724 | 0.66 | 0.701563 |
Target: 5'- aGCAAAGGCgGcgcuaACUGGcACuGCGACGUc -3' miRNA: 3'- gCGUUUCCGgC-----UGGUCuUG-CGCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 24021 | 0.66 | 0.690674 |
Target: 5'- aGCcGccGCCGGCCGGAuCGguCGACGUg -3' miRNA: 3'- gCGuUucCGGCUGGUCUuGC--GCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 14033 | 0.66 | 0.690674 |
Target: 5'- gGCGAcGGuUCGGCCAcGGGCGCcGCGUc -3' miRNA: 3'- gCGUUuCC-GGCUGGU-CUUGCGcUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 38490 | 0.66 | 0.690674 |
Target: 5'- cCGCGAGGcGCUcACgCAGAucgGCGuCGACGUg -3' miRNA: 3'- -GCGUUUC-CGGcUG-GUCU---UGC-GCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 8962 | 0.66 | 0.679728 |
Target: 5'- aGCAAcgucGCCGACaCGGuGCGcCGACGUu -3' miRNA: 3'- gCGUUuc--CGGCUG-GUCuUGC-GCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 41970 | 0.66 | 0.679728 |
Target: 5'- aGCGAGGGCUGcggguACCuGAACGacgccgagcacaUGACGUg -3' miRNA: 3'- gCGUUUCCGGC-----UGGuCUUGC------------GCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 30554 | 0.66 | 0.668736 |
Target: 5'- aCGCuGAGGGCaccaGACCGGAuuCGCGcACa- -3' miRNA: 3'- -GCG-UUUCCGg---CUGGUCUu-GCGC-UGca -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 39705 | 0.66 | 0.668736 |
Target: 5'- gCGCGAGcuggaaauGGCCGGCgCGGGcCGCGuCGa -3' miRNA: 3'- -GCGUUU--------CCGGCUG-GUCUuGCGCuGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 40118 | 0.66 | 0.668736 |
Target: 5'- gGCAucGGGCCGACUcgugcagcucuGGGCGCcGCGUg -3' miRNA: 3'- gCGUu-UCCGGCUGGu----------CUUGCGcUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 19032 | 0.66 | 0.668736 |
Target: 5'- aGCGAcGGCCGAugcgcgccgccCCgAGGACGCGcCGc -3' miRNA: 3'- gCGUUuCCGGCU-----------GG-UCUUGCGCuGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 9555 | 0.66 | 0.65771 |
Target: 5'- uCGCAcAGGUCGACaaAGAACGUGuccaggcgcuGCGUg -3' miRNA: 3'- -GCGUuUCCGGCUGg-UCUUGCGC----------UGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 23378 | 0.66 | 0.65771 |
Target: 5'- uCGUGAAGGCUG-CCGcGAacaucGCGCGAUGc -3' miRNA: 3'- -GCGUUUCCGGCuGGU-CU-----UGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 3193 | 0.66 | 0.65771 |
Target: 5'- aGCAcGAGGCCGgugaGCCGGcccGGCGCGcCGc -3' miRNA: 3'- gCGU-UUCCGGC----UGGUC---UUGCGCuGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 34700 | 0.66 | 0.65771 |
Target: 5'- gGCGccGGCCGuggucugcaaACCAuuGGGCGUGGCGa -3' miRNA: 3'- gCGUuuCCGGC----------UGGU--CUUGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 45840 | 0.66 | 0.65771 |
Target: 5'- cCGCAAccuuGGCCGAgC---GCGCGGCGc -3' miRNA: 3'- -GCGUUu---CCGGCUgGucuUGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 35960 | 0.66 | 0.64666 |
Target: 5'- aGCGAacAGGCCGAagucagucgUCAuGAGCGCGAUc- -3' miRNA: 3'- gCGUU--UCCGGCU---------GGU-CUUGCGCUGca -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 23126 | 0.66 | 0.64666 |
Target: 5'- uGCGGccAGGCCGGCCAGcauCGUGuugcCGa -3' miRNA: 3'- gCGUU--UCCGGCUGGUCuu-GCGCu---GCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 30620 | 0.66 | 0.64666 |
Target: 5'- aCGCGccGcGCgCGAUCAGGGCGUucauGACGUa -3' miRNA: 3'- -GCGUuuC-CG-GCUGGUCUUGCG----CUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 45257 | 0.66 | 0.64666 |
Target: 5'- gGCGGgcGGGCCGGCCcgcauucGAACG-GugGUg -3' miRNA: 3'- gCGUU--UCCGGCUGGu------CUUGCgCugCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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