miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 22493 0.66 0.449618
Target:  5'- --cGCCGGcggCGGCCgGCgGCgGUUcgGCg -3'
miRNA:   3'- ggaCGGCCa--GCCGGaCGgCGgUAA--CG- -5'
24119 3' -60.3 NC_005263.2 + 12666 0.66 0.449618
Target:  5'- gUCgGCCGG-CGcGCCgggGUCGUCGUUcGCg -3'
miRNA:   3'- -GGaCGGCCaGC-CGGa--CGGCGGUAA-CG- -5'
24119 3' -60.3 NC_005263.2 + 29406 0.66 0.4401
Target:  5'- gUUGCCGccCGcGCCUGCCgcGCCGcuagcUUGCu -3'
miRNA:   3'- gGACGGCcaGC-CGGACGG--CGGU-----AACG- -5'
24119 3' -60.3 NC_005263.2 + 26002 0.66 0.4401
Target:  5'- gCgUGCCGG-CGGCa-GCCGUCAcgccuggugUGCc -3'
miRNA:   3'- -GgACGGCCaGCCGgaCGGCGGUa--------ACG- -5'
24119 3' -60.3 NC_005263.2 + 47492 0.66 0.434444
Target:  5'- aCCgGCCcgcuGUCgGGCaCUGCCuacguuacugauggcGCCAUUGCc -3'
miRNA:   3'- -GGaCGGc---CAG-CCG-GACGG---------------CGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 25616 0.66 0.430697
Target:  5'- aCC-GCCGc-CGGCC-GCCGCCg--GCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGaCGGCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 21056 0.66 0.430697
Target:  5'- uCCUGCCcGaCGGgCgGCCGCgCAUccUGCu -3'
miRNA:   3'- -GGACGGcCaGCCgGaCGGCG-GUA--ACG- -5'
24119 3' -60.3 NC_005263.2 + 33946 0.66 0.421413
Target:  5'- aCCgGCCGc-CGGCCcgaaGUCGCCAagGCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGa---CGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 24539 0.66 0.403213
Target:  5'- -gUGCgGGuUCGuGCCUGCCGgC--UGCg -3'
miRNA:   3'- ggACGgCC-AGC-CGGACGGCgGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 43451 0.66 0.403213
Target:  5'- cCCgcgcGCCGGcCuGCCcGUCGCCAUgaucGCg -3'
miRNA:   3'- -GGa---CGGCCaGcCGGaCGGCGGUAa---CG- -5'
24119 3' -60.3 NC_005263.2 + 8866 0.66 0.403213
Target:  5'- gCCga-CGGgauacgCGGCCcgUGCUGCCggUGCa -3'
miRNA:   3'- -GGacgGCCa-----GCCGG--ACGGCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 23802 0.66 0.394301
Target:  5'- cCCgUGCCGG-CGGCCgucuugaucGUCGCCGcgaaaGCg -3'
miRNA:   3'- -GG-ACGGCCaGCCGGa--------CGGCGGUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 9972 0.66 0.394301
Target:  5'- cCCUGCgGGUgcgcacgccgucCGGUUcGCCGUC-UUGCg -3'
miRNA:   3'- -GGACGgCCA------------GCCGGaCGGCGGuAACG- -5'
24119 3' -60.3 NC_005263.2 + 24828 0.66 0.394301
Target:  5'- gCCUGUCcccaGGgcuuccaCGGCgUGCCGCCAgUGg -3'
miRNA:   3'- -GGACGG----CCa------GCCGgACGGCGGUaACg -5'
24119 3' -60.3 NC_005263.2 + 3402 0.66 0.394301
Target:  5'- gCUGCa-GUCGGCC-GCCGaCGUgUGCg -3'
miRNA:   3'- gGACGgcCAGCCGGaCGGCgGUA-ACG- -5'
24119 3' -60.3 NC_005263.2 + 173 0.67 0.385518
Target:  5'- uCCgcgcCCGGggCGaGCCcGCUGCCcgUGCg -3'
miRNA:   3'- -GGac--GGCCa-GC-CGGaCGGCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 14134 0.67 0.385518
Target:  5'- --aGCCGcagCGGCCagcgcgGCCGCCuugGCg -3'
miRNA:   3'- ggaCGGCca-GCCGGa-----CGGCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 9288 0.67 0.385518
Target:  5'- cCCaUGCCGGacauuUCGGCaagcucagcgaUGCCGCUcgUGg -3'
miRNA:   3'- -GG-ACGGCC-----AGCCGg----------ACGGCGGuaACg -5'
24119 3' -60.3 NC_005263.2 + 29292 0.67 0.376866
Target:  5'- gCUGCaCGG-CGGCCggGUCGgCAU-GCg -3'
miRNA:   3'- gGACG-GCCaGCCGGa-CGGCgGUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 8359 0.67 0.376866
Target:  5'- gCUUGCCgaGGUC-GCUUGUCGUCAgugGCg -3'
miRNA:   3'- -GGACGG--CCAGcCGGACGGCGGUaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.