miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 5' -52.4 NC_005263.2 + 15484 0.66 0.857804
Target:  5'- gCUGCgGCGGCGCgGUGAgCAucagCaCCGg -3'
miRNA:   3'- -GAUGgUGCUGUGgUACUgGUua--G-GGC- -5'
24119 5' -52.4 NC_005263.2 + 39222 0.66 0.857804
Target:  5'- uUGCgCGCGcuGCACCGgcagcacgGGCCGcguAUCCCGu -3'
miRNA:   3'- gAUG-GUGC--UGUGGUa-------CUGGU---UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 31359 0.66 0.84918
Target:  5'- aUGCCuuuCGACAgCGUGACUGAcgCCGg -3'
miRNA:   3'- gAUGGu--GCUGUgGUACUGGUUagGGC- -5'
24119 5' -52.4 NC_005263.2 + 29541 0.66 0.84918
Target:  5'- -gGCCGgGACGCC---ACCGGUgCCGg -3'
miRNA:   3'- gaUGGUgCUGUGGuacUGGUUAgGGC- -5'
24119 5' -52.4 NC_005263.2 + 39168 0.66 0.831226
Target:  5'- -cGCgACGGCAUCGguauGCCGAUCaCCGa -3'
miRNA:   3'- gaUGgUGCUGUGGUac--UGGUUAG-GGC- -5'
24119 5' -52.4 NC_005263.2 + 34070 0.66 0.812394
Target:  5'- ---aCGCGGCGcCCGUGGCCGaaccGUCgCCGu -3'
miRNA:   3'- gaugGUGCUGU-GGUACUGGU----UAG-GGC- -5'
24119 5' -52.4 NC_005263.2 + 19300 0.67 0.802674
Target:  5'- --gUCACGGuCACCGUGACgcg-CCCGg -3'
miRNA:   3'- gauGGUGCU-GUGGUACUGguuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 21738 0.67 0.802674
Target:  5'- aUGCgCGCGugauaagaucGCGCgCAUGACCAcgaccaacGUCCCGc -3'
miRNA:   3'- gAUG-GUGC----------UGUG-GUACUGGU--------UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 28245 0.67 0.792767
Target:  5'- -cGCCGCGcuCGCCGUGACCuugUUCGc -3'
miRNA:   3'- gaUGGUGCu-GUGGUACUGGuuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 2284 0.67 0.772438
Target:  5'- -cGCCGuCGGCaggucgugcGCCGUGGCCGGcacgCCCGc -3'
miRNA:   3'- gaUGGU-GCUG---------UGGUACUGGUUa---GGGC- -5'
24119 5' -52.4 NC_005263.2 + 44256 0.67 0.772438
Target:  5'- ---aCugGACGCCGgcUGACCAc-CCCGa -3'
miRNA:   3'- gaugGugCUGUGGU--ACUGGUuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 45310 0.67 0.762039
Target:  5'- gUGCuCAUGGCACUc-GACCAG-CCCGg -3'
miRNA:   3'- gAUG-GUGCUGUGGuaCUGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 4958 0.67 0.762039
Target:  5'- gUACCAgGGCGCaAUGGCCGAgCCUu -3'
miRNA:   3'- gAUGGUgCUGUGgUACUGGUUaGGGc -5'
24119 5' -52.4 NC_005263.2 + 20344 0.67 0.762039
Target:  5'- cCUGCCGCcgcaccucgggGGCGCgCAUGGCUGAUCgCGc -3'
miRNA:   3'- -GAUGGUG-----------CUGUG-GUACUGGUUAGgGC- -5'
24119 5' -52.4 NC_005263.2 + 21469 0.67 0.762039
Target:  5'- -cGCUGCGGCGCCAcUGGCaAAUCCgGc -3'
miRNA:   3'- gaUGGUGCUGUGGU-ACUGgUUAGGgC- -5'
24119 5' -52.4 NC_005263.2 + 35028 0.68 0.7515
Target:  5'- gCUGCCGucCGACACCGgcaGACacg-CCCGu -3'
miRNA:   3'- -GAUGGU--GCUGUGGUa--CUGguuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 33750 0.68 0.7515
Target:  5'- -aACCACGugG---UGACCGgaAUCCCGa -3'
miRNA:   3'- gaUGGUGCugUgguACUGGU--UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 3425 0.68 0.7515
Target:  5'- aCUGCUGCGGCGCCGUcgcGACCugguugaCCUGc -3'
miRNA:   3'- -GAUGGUGCUGUGGUA---CUGGuua----GGGC- -5'
24119 5' -52.4 NC_005263.2 + 4853 0.68 0.740835
Target:  5'- gUACgCGCG-CGCCGUG-CCGAUgCCGc -3'
miRNA:   3'- gAUG-GUGCuGUGGUACuGGUUAgGGC- -5'
24119 5' -52.4 NC_005263.2 + 37256 0.68 0.730053
Target:  5'- -cGCCGCGACGCCGUaGCCcgcaCCa -3'
miRNA:   3'- gaUGGUGCUGUGGUAcUGGuuagGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.