Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24121 | 3' | -54.4 | NC_005263.2 | + | 18746 | 0.66 | 0.706625 |
Target: 5'- cGCcAGAucGGCgcgaUCGuaGGCGGCGCGGUg -3' miRNA: 3'- -CGuUCU--UCG----AGCggCUGCCGUGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 46148 | 0.66 | 0.70334 |
Target: 5'- uGCAgcAGAucgacgcgguugccGGCgUCGCCGGugcCGGCGCGcUCg -3' miRNA: 3'- -CGU--UCU--------------UCG-AGCGGCU---GCCGUGCuAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 30457 | 0.66 | 0.69565 |
Target: 5'- cGCGGGucgauGCcguagCGCCGACGGaACGcAUCg -3' miRNA: 3'- -CGUUCuu---CGa----GCGGCUGCCgUGC-UAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 37923 | 0.66 | 0.69565 |
Target: 5'- aGCGGGcgcAGGCgCGCCGcCGGCAgcCGGUg -3' miRNA: 3'- -CGUUC---UUCGaGCGGCuGCCGU--GCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 6235 | 0.66 | 0.69565 |
Target: 5'- uGCccGAucGCUCGCgGccaGGCGCGGUCg -3' miRNA: 3'- -CGuuCUu-CGAGCGgCug-CCGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 9358 | 0.66 | 0.69565 |
Target: 5'- cGguGaAGGCgagCGCCGGCGGCuGCGGg- -3' miRNA: 3'- -CguUcUUCGa--GCGGCUGCCG-UGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 24918 | 0.66 | 0.69565 |
Target: 5'- uGCAGGggGCucuaacccguUCGgUGGCGGCggacgGCGGUg -3' miRNA: 3'- -CGUUCuuCG----------AGCgGCUGCCG-----UGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 10419 | 0.66 | 0.694548 |
Target: 5'- cGCAGGAaaggucggacAGCUCGuCCGAUucaaucaGGU-CGAUCg -3' miRNA: 3'- -CGUUCU----------UCGAGC-GGCUG-------CCGuGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 9889 | 0.67 | 0.684611 |
Target: 5'- cGCuuucauGCUCGUCGuCGGCGCGcggcGUCg -3' miRNA: 3'- -CGuucuu-CGAGCGGCuGCCGUGC----UAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 26346 | 0.67 | 0.684611 |
Target: 5'- uGCGGGAcGUUgGUCGugGucaugcGCGCGAUCu -3' miRNA: 3'- -CGUUCUuCGAgCGGCugC------CGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 2478 | 0.67 | 0.684611 |
Target: 5'- uCGAGGAGCgccucaUCGuaGACGugauGCACGAUCu -3' miRNA: 3'- cGUUCUUCG------AGCggCUGC----CGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 20892 | 0.67 | 0.684611 |
Target: 5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3' miRNA: 3'- -CGUUCUUCGa----------GCGGC-UGCCG----UG-CUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 6831 | 0.67 | 0.67352 |
Target: 5'- uGCGGGAAGCgcagCGaCGGCGaCACGAc- -3' miRNA: 3'- -CGUUCUUCGa---GCgGCUGCcGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 44153 | 0.67 | 0.67352 |
Target: 5'- gGCcuGccAGGCUCGCUGGCuGGCGCGu-- -3' miRNA: 3'- -CGuuC--UUCGAGCGGCUG-CCGUGCuag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 1397 | 0.67 | 0.67352 |
Target: 5'- aGCGGGuucgauuauuGCUUGUCGuCGGCGCGcgCc -3' miRNA: 3'- -CGUUCuu--------CGAGCGGCuGCCGUGCuaG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 38081 | 0.67 | 0.67352 |
Target: 5'- uCGAGcAGCUCGgCGGCGGUGCu--- -3' miRNA: 3'- cGUUCuUCGAGCgGCUGCCGUGcuag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 25348 | 0.67 | 0.662389 |
Target: 5'- gGCAGGucGCcaUCGCguuccuCGGCGGCcUGAUCg -3' miRNA: 3'- -CGUUCuuCG--AGCG------GCUGCCGuGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 7027 | 0.67 | 0.651229 |
Target: 5'- uGCAuGucGCgCGCCGACGGaugGCGcAUCg -3' miRNA: 3'- -CGUuCuuCGaGCGGCUGCCg--UGC-UAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 15207 | 0.67 | 0.640051 |
Target: 5'- aGCGGGccGCcgaCGCCGACGcCACGAa- -3' miRNA: 3'- -CGUUCuuCGa--GCGGCUGCcGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 44762 | 0.67 | 0.640051 |
Target: 5'- cGCucGAccgcGCgcggCGCCGGCGGCGCGc-- -3' miRNA: 3'- -CGuuCUu---CGa---GCGGCUGCCGUGCuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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