miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 5' -66 NC_005263.2 + 27033 0.66 0.240678
Target:  5'- uGugUCGUucgagcaggauGCG-CGGCC-GCCCGUCGg -3'
miRNA:   3'- uCugGGCG-----------CGCgGCCGGaCGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 6632 0.66 0.240678
Target:  5'- cGACUCGCccGCGUCGagcagcGCCUGCUCGaUCa -3'
miRNA:   3'- uCUGGGCG--CGCGGC------CGGACGGGC-AGc -5'
24121 5' -66 NC_005263.2 + 25694 0.66 0.239508
Target:  5'- cGGACacggcgagcacggCgGCGCGUacguucgCGGCCUGCCCGa-- -3'
miRNA:   3'- -UCUG-------------GgCGCGCG-------GCCGGACGGGCagc -5'
24121 5' -66 NC_005263.2 + 33308 0.66 0.238924
Target:  5'- cAGugCCGCGCacgaacggcaagagGuaGGCgUGCgCGUCGg -3'
miRNA:   3'- -UCugGGCGCG--------------CggCCGgACGgGCAGC- -5'
24121 5' -66 NC_005263.2 + 37628 0.66 0.234872
Target:  5'- aAGcACCUGCGCGgCGaCCUGCuuGUa- -3'
miRNA:   3'- -UC-UGGGCGCGCgGCcGGACGggCAgc -5'
24121 5' -66 NC_005263.2 + 30631 0.66 0.234872
Target:  5'- aGGAUgC-UGCGCCGGCCgGCguugaCGUCGa -3'
miRNA:   3'- -UCUGgGcGCGCGGCCGGaCGg----GCAGC- -5'
24121 5' -66 NC_005263.2 + 27379 0.66 0.234298
Target:  5'- uAGGCgCGCuucguugccgacgGC-CCGGCCUGCagCGUCGu -3'
miRNA:   3'- -UCUGgGCG-------------CGcGGCCGGACGg-GCAGC- -5'
24121 5' -66 NC_005263.2 + 946 0.66 0.233153
Target:  5'- uGGcACCCGCgaGCGgCGacguagcggcggucGCCUGCgCGUCGg -3'
miRNA:   3'- -UC-UGGGCG--CGCgGC--------------CGGACGgGCAGC- -5'
24121 5' -66 NC_005263.2 + 12668 0.66 0.229184
Target:  5'- cGGCCgGCGCGCCGG---GgUCGUCGu -3'
miRNA:   3'- uCUGGgCGCGCGGCCggaCgGGCAGC- -5'
24121 5' -66 NC_005263.2 + 11984 0.66 0.223613
Target:  5'- cAGGCgCGCaGCGUCguguuacgGGCCaGCUCGUCGu -3'
miRNA:   3'- -UCUGgGCG-CGCGG--------CCGGaCGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 18898 0.66 0.223613
Target:  5'- cGGCaaauaCGCGCCGGCCUGC--GUCGa -3'
miRNA:   3'- uCUGggc--GCGCGGCCGGACGggCAGC- -5'
24121 5' -66 NC_005263.2 + 10195 0.66 0.223613
Target:  5'- cAGGCCgaaGCGCucGCCGGCCUcggGCUCGa-- -3'
miRNA:   3'- -UCUGGg--CGCG--CGGCCGGA---CGGGCagc -5'
24121 5' -66 NC_005263.2 + 39114 0.66 0.223613
Target:  5'- cGACUCGUGCGCCGuGCgUcggcGCUCGUg- -3'
miRNA:   3'- uCUGGGCGCGCGGC-CGgA----CGGGCAgc -5'
24121 5' -66 NC_005263.2 + 45253 0.66 0.223613
Target:  5'- -aACUgGCGgGCgGGCCgGCCCGcauUCGa -3'
miRNA:   3'- ucUGGgCGCgCGgCCGGaCGGGC---AGC- -5'
24121 5' -66 NC_005263.2 + 42895 0.66 0.218157
Target:  5'- cGugCCGCGCGCUcGCCUGgaCG-CGa -3'
miRNA:   3'- uCugGGCGCGCGGcCGGACggGCaGC- -5'
24121 5' -66 NC_005263.2 + 11469 0.66 0.212816
Target:  5'- -aGCUCGCGCuGCCGcGCacuguuaaaCUGCgCCGUCGc -3'
miRNA:   3'- ucUGGGCGCG-CGGC-CG---------GACG-GGCAGC- -5'
24121 5' -66 NC_005263.2 + 1945 0.66 0.212816
Target:  5'- cGGcACCgGCGaCGCCGGCaa-CCgCGUCGa -3'
miRNA:   3'- -UC-UGGgCGC-GCGGCCGgacGG-GCAGC- -5'
24121 5' -66 NC_005263.2 + 31714 0.66 0.212816
Target:  5'- -cACCCGCGaUGCCGGCCaGCuucaucaggccgCCGcCGa -3'
miRNA:   3'- ucUGGGCGC-GCGGCCGGaCG------------GGCaGC- -5'
24121 5' -66 NC_005263.2 + 10356 0.66 0.212816
Target:  5'- --uCCgGC-CGUCGuauGCCUGCCCGUCa -3'
miRNA:   3'- ucuGGgCGcGCGGC---CGGACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 43639 0.66 0.212816
Target:  5'- cGACCCGCGCGCaCGGacgaagaagUGCUCG-Ca -3'
miRNA:   3'- uCUGGGCGCGCG-GCCgg-------ACGGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.