miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 3' -52.4 NC_005263.2 + 29298 0.66 0.806668
Target:  5'- --cGGCGGccgGGUcGGCaUGCGCAucgcgcgcgGCGAGCa -3'
miRNA:   3'- gcuUCGCU---UCA-CCG-ACGCGU---------UGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 35242 0.66 0.789646
Target:  5'- uCGgcGCGGucgaccccucgaucaAGUGGCaguggaaUGCGCugcGCGAACu -3'
miRNA:   3'- -GCuuCGCU---------------UCACCG-------ACGCGu--UGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 47294 0.66 0.786588
Target:  5'- cCGAAGCGcAGUccGCUGU-CGACGGACu -3'
miRNA:   3'- -GCUUCGCuUCAc-CGACGcGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 13537 0.66 0.786588
Target:  5'- -cAAGCGAcgcugaccGUGGCUGCGCcaAAUGAuACg -3'
miRNA:   3'- gcUUCGCUu-------CACCGACGCG--UUGCU-UG- -5'
24123 3' -52.4 NC_005263.2 + 36497 0.67 0.776283
Target:  5'- uCGAAgGCGAAGU-GCUGCGCcACu--- -3'
miRNA:   3'- -GCUU-CGCUUCAcCGACGCGuUGcuug -5'
24123 3' -52.4 NC_005263.2 + 27960 0.67 0.776283
Target:  5'- aCGgcGCGGA-UGGCccagagcugcUGCGCG-CGAGCg -3'
miRNA:   3'- -GCuuCGCUUcACCG----------ACGCGUuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 24548 0.67 0.776283
Target:  5'- gCGgcGCGGgcggcGGcGGCUGCGCcACGGucgGCa -3'
miRNA:   3'- -GCuuCGCU-----UCaCCGACGCGuUGCU---UG- -5'
24123 3' -52.4 NC_005263.2 + 38349 0.67 0.776283
Target:  5'- gGAuGCGAAGUcGG-UGCGCAccGCGAu- -3'
miRNA:   3'- gCUuCGCUUCA-CCgACGCGU--UGCUug -5'
24123 3' -52.4 NC_005263.2 + 44841 0.67 0.763706
Target:  5'- gCGAGGCGAuacucgacgccUGuCUGCGCGGCGAucGCg -3'
miRNA:   3'- -GCUUCGCUuc---------ACcGACGCGUUGCU--UG- -5'
24123 3' -52.4 NC_005263.2 + 12235 0.67 0.744457
Target:  5'- aCGcGGCGAAGUauuuggGGCUGcCGCAGCc--- -3'
miRNA:   3'- -GCuUCGCUUCA------CCGAC-GCGUUGcuug -5'
24123 3' -52.4 NC_005263.2 + 10152 0.67 0.744457
Target:  5'- aCGAGGCGGgcAGcuUGGCgucgccgagaGCGCGaaucGCGAGCa -3'
miRNA:   3'- -GCUUCGCU--UC--ACCGa---------CGCGU----UGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 29605 0.67 0.733588
Target:  5'- cCGAucGCGAGGc-GUUGCGCuuCGGACg -3'
miRNA:   3'- -GCUu-CGCUUCacCGACGCGuuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 45839 0.67 0.733588
Target:  5'- cCGAcGGCGAAcgcGCUGCGCu-CGAACa -3'
miRNA:   3'- -GCU-UCGCUUcacCGACGCGuuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 33989 0.68 0.700373
Target:  5'- aGcGGCGAGGccggccguguUGGCUGCGUcGCGGcgcGCg -3'
miRNA:   3'- gCuUCGCUUC----------ACCGACGCGuUGCU---UG- -5'
24123 3' -52.4 NC_005263.2 + 37975 0.68 0.700373
Target:  5'- cCGGcuGGCGcugaAGGUGGCg--GCAACGAACu -3'
miRNA:   3'- -GCU--UCGC----UUCACCGacgCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 31022 0.68 0.689142
Target:  5'- uGcGGCGAGGcgcGGCgUGCGCugcuCGAGCa -3'
miRNA:   3'- gCuUCGCUUCa--CCG-ACGCGuu--GCUUG- -5'
24123 3' -52.4 NC_005263.2 + 33319 0.68 0.689142
Target:  5'- aCGAacGGCaaGAGGUaGGCgUGCGCGuCGGGCa -3'
miRNA:   3'- -GCU--UCG--CUUCA-CCG-ACGCGUuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 24685 0.68 0.689142
Target:  5'- gGggGCGccGGUaacGGCgGCGCGcCGAACg -3'
miRNA:   3'- gCuuCGCu-UCA---CCGaCGCGUuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 41342 0.69 0.655145
Target:  5'- aCGAGGCcGAGcucgcccGGC-GCGCGAUGGACg -3'
miRNA:   3'- -GCUUCGcUUCa------CCGaCGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 41553 0.69 0.643752
Target:  5'- gCGgcGCGccGUGGCgGCGauGCGAGCu -3'
miRNA:   3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.