miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 28712 0.65 0.916072
Target:  5'- cGCGUUgccguacugcgcgcCGCcGAgGCUGACGGCaaUGCg -3'
miRNA:   3'- -CGCAA--------------GCGuCUaCGAUUGCUGcgACG- -5'
24123 5' -50.8 NC_005263.2 + 21628 0.66 0.911476
Target:  5'- ----gCGCAG-UGC-GGCGACGCgcgGCg -3'
miRNA:   3'- cgcaaGCGUCuACGaUUGCUGCGa--CG- -5'
24123 5' -50.8 NC_005263.2 + 39320 0.66 0.911476
Target:  5'- cGCGaUCGCAGGUugGCUGcucaccCGGgGCUGg -3'
miRNA:   3'- -CGCaAGCGUCUA--CGAUu-----GCUgCGACg -5'
24123 5' -50.8 NC_005263.2 + 24544 0.66 0.911476
Target:  5'- gGCGgcggCGCGG--GC-GGCGGCgGCUGCg -3'
miRNA:   3'- -CGCaa--GCGUCuaCGaUUGCUG-CGACG- -5'
24123 5' -50.8 NC_005263.2 + 4171 0.66 0.911476
Target:  5'- cGCGccgCGCucGUGCUGcaGCGGCGUgUGCu -3'
miRNA:   3'- -CGCaa-GCGucUACGAU--UGCUGCG-ACG- -5'
24123 5' -50.8 NC_005263.2 + 19088 0.66 0.904659
Target:  5'- uGCGUcUUGCAGG-GCUGGcCGAUGUcgaauUGCu -3'
miRNA:   3'- -CGCA-AGCGUCUaCGAUU-GCUGCG-----ACG- -5'
24123 5' -50.8 NC_005263.2 + 43921 0.66 0.904659
Target:  5'- ----gCGCAGAaGCacACGcCGCUGCa -3'
miRNA:   3'- cgcaaGCGUCUaCGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 47676 0.66 0.904659
Target:  5'- aCG-UCGCGGcgauccucGUGCUGuGCGGCaaGCUGCu -3'
miRNA:   3'- cGCaAGCGUC--------UACGAU-UGCUG--CGACG- -5'
24123 5' -50.8 NC_005263.2 + 19742 0.66 0.904659
Target:  5'- uGCGaucggCGCuGGcgcGCUGGCGGCGCUcGUg -3'
miRNA:   3'- -CGCaa---GCGuCUa--CGAUUGCUGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 22186 0.66 0.89755
Target:  5'- cCGggCGaaccGGUGCUGGCGugGCccgggGCa -3'
miRNA:   3'- cGCaaGCgu--CUACGAUUGCugCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 2012 0.66 0.89755
Target:  5'- cGCGccaaaucCGCAGcgGCgcaUAACGGCGCccGCu -3'
miRNA:   3'- -CGCaa-----GCGUCuaCG---AUUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 29583 0.66 0.895361
Target:  5'- cGCGcUCGCGG-UGUcGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGaUUGC--------------UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 46566 0.66 0.890154
Target:  5'- cGUGUUCaacgaAGugccGCUGACGAucaCGCUGCa -3'
miRNA:   3'- -CGCAAGcg---UCua--CGAUUGCU---GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 20863 0.66 0.890154
Target:  5'- cGCGagCGUc---GC-AACGGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGucuaCGaUUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 27412 0.66 0.890154
Target:  5'- aGCG-UCGUAGcgaGUGCUGucGCGuCGCgcucgGCa -3'
miRNA:   3'- -CGCaAGCGUC---UACGAU--UGCuGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 7430 0.66 0.887879
Target:  5'- cGCGUcgaGCAGGUaGCgcACGAaugccaaggcuuccUGCUGCa -3'
miRNA:   3'- -CGCAag-CGUCUA-CGauUGCU--------------GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 24700 0.66 0.882473
Target:  5'- gGCGgcgCGCcGAacgUGCcgGGCGGCGCagGCg -3'
miRNA:   3'- -CGCaa-GCGuCU---ACGa-UUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 46171 0.66 0.882473
Target:  5'- gGCG-UCGCcGGUGCcGGCG-CGCUcguGCa -3'
miRNA:   3'- -CGCaAGCGuCUACGaUUGCuGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 41587 0.66 0.882473
Target:  5'- aGCG-UCGC-GAUGCUcACGAC-CgGCu -3'
miRNA:   3'- -CGCaAGCGuCUACGAuUGCUGcGaCG- -5'
24123 5' -50.8 NC_005263.2 + 9460 0.66 0.882473
Target:  5'- -gGUUgGCGucGAUGC--GCGACGCgGCu -3'
miRNA:   3'- cgCAAgCGU--CUACGauUGCUGCGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.