miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 31752 0.69 0.267011
Target:  5'- aGCGAcGCgGCCGCGCGcuucGUCUCGUCGa -3'
miRNA:   3'- aCGUU-UGaCGGCGUGC----CGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 14109 0.69 0.267011
Target:  5'- cGCGAcGCaGCCaacacgGC-CGGCCUCGCCGc -3'
miRNA:   3'- aCGUU-UGaCGG------CGuGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 37929 0.69 0.273839
Target:  5'- cGCAGGCgcGCCGC-CGGCa--GCCGg -3'
miRNA:   3'- aCGUUUGa-CGGCGuGCCGgagCGGCa -5'
24124 5' -59.4 NC_005263.2 + 23260 0.69 0.273839
Target:  5'- cGCcGGCUGgCGCAcCGGCaC-CGCCGUu -3'
miRNA:   3'- aCGuUUGACgGCGU-GCCG-GaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 14095 0.69 0.280807
Target:  5'- gGCugguACcgGCUGCGCGGCggUCGCCGUc -3'
miRNA:   3'- aCGuu--UGa-CGGCGUGCCGg-AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 27371 0.69 0.280807
Target:  5'- aGCGAGCggcGCgGCgGCGGCCggcgCGCUGa -3'
miRNA:   3'- aCGUUUGa--CGgCG-UGCCGGa---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 33941 0.69 0.280807
Target:  5'- cGCAcACcgGCCGC-CGGCCcgaagUCGCCa- -3'
miRNA:   3'- aCGUuUGa-CGGCGuGCCGG-----AGCGGca -5'
24124 5' -59.4 NC_005263.2 + 2905 0.69 0.280807
Target:  5'- gGCcgAGACgUGCUGCGCGGCCgUCGuaaCCGUc -3'
miRNA:   3'- aCG--UUUG-ACGGCGUGCCGG-AGC---GGCA- -5'
24124 5' -59.4 NC_005263.2 + 45692 0.69 0.285767
Target:  5'- gGCAcGCUGCCGCuguacggcgaccaaGCGaccGCCggCGCCGUc -3'
miRNA:   3'- aCGUuUGACGGCG--------------UGC---CGGa-GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 38565 0.69 0.295162
Target:  5'- cGCGAGC-GCCGCGuCGGUCgcuGCCGc -3'
miRNA:   3'- aCGUUUGaCGGCGU-GCCGGag-CGGCa -5'
24124 5' -59.4 NC_005263.2 + 10741 0.69 0.295162
Target:  5'- cGCAGACUcgagcGCaucgaGCACGGCCgCGaCCGa -3'
miRNA:   3'- aCGUUUGA-----CGg----CGUGCCGGaGC-GGCa -5'
24124 5' -59.4 NC_005263.2 + 9515 0.69 0.295162
Target:  5'- cGCGGGCUGaauCGUGCGGCCgugCGCgGc -3'
miRNA:   3'- aCGUUUGACg--GCGUGCCGGa--GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 16426 0.69 0.295162
Target:  5'- gGCGucggcGCUGgCGCgGCgGGCCUCGCUGg -3'
miRNA:   3'- aCGUu----UGACgGCG-UG-CCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 6864 0.69 0.298101
Target:  5'- aGCGGAUUGCgGCgACGGCauuguccaucgagggCUUGCCGg -3'
miRNA:   3'- aCGUUUGACGgCG-UGCCG---------------GAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 22403 0.69 0.302551
Target:  5'- cGCGAACguacgcGCCGC-CGuG-CUCGCCGUg -3'
miRNA:   3'- aCGUUUGa-----CGGCGuGC-CgGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 8380 0.68 0.317755
Target:  5'- cGCucGCcagGUCGaCGCGGCCcgCGCCGg -3'
miRNA:   3'- aCGuuUGa--CGGC-GUGCCGGa-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 30282 0.68 0.32321
Target:  5'- cGCAAucggGCCGCGCGcggcauccucggccGCCUUGCCa- -3'
miRNA:   3'- aCGUUuga-CGGCGUGC--------------CGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 11297 0.68 0.333526
Target:  5'- cGaCGAGCaGCgGCAauuuaUGGCCUCGCCa- -3'
miRNA:   3'- aC-GUUUGaCGgCGU-----GCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 21396 0.68 0.333526
Target:  5'- cGC--GCUGCCGCAggcCGGCCU-GCuCGg -3'
miRNA:   3'- aCGuuUGACGGCGU---GCCGGAgCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 20934 0.68 0.333526
Target:  5'- cGCAGACgaaUGCgGUgaugACGGCCgcgCGCUGUc -3'
miRNA:   3'- aCGUUUG---ACGgCG----UGCCGGa--GCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.