miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24154 3' -60.2 NC_005263.2 + 45676 0.66 0.431903
Target:  5'- uGCCGcGCCGUaCcaaGGCACGCUGccgcuguacGGCGa -3'
miRNA:   3'- -CGGC-CGGCGaGaa-CCGUGCGGU---------UCGC- -5'
24154 3' -60.2 NC_005263.2 + 17958 0.66 0.431903
Target:  5'- cGCCaGCCGUgaacGGCauccaGCGCCAgAGCGg -3'
miRNA:   3'- -CGGcCGGCGagaaCCG-----UGCGGU-UCGC- -5'
24154 3' -60.2 NC_005263.2 + 6627 0.66 0.431903
Target:  5'- -aCGGCCGaCUCgcc-CGCGUCGAGCa -3'
miRNA:   3'- cgGCCGGC-GAGaaccGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 26308 0.66 0.431903
Target:  5'- cGCCGGCCaGCU----GCAgGCCGgucGGCGu -3'
miRNA:   3'- -CGGCCGG-CGAgaacCGUgCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 19185 0.66 0.42254
Target:  5'- cGUCGGCCGCgcgUGGgAUGU--GGCGa -3'
miRNA:   3'- -CGGCCGGCGagaACCgUGCGguUCGC- -5'
24154 3' -60.2 NC_005263.2 + 44756 0.66 0.42254
Target:  5'- uCUGGUCGCUCgaccGCGCGCgGcgccGGCGg -3'
miRNA:   3'- cGGCCGGCGAGaac-CGUGCGgU----UCGC- -5'
24154 3' -60.2 NC_005263.2 + 9136 0.66 0.42254
Target:  5'- uGCCGGUCGCgucgugguucgUCUcaugcuuguUGGCcgugccgaucaGCGCgAAGCGa -3'
miRNA:   3'- -CGGCCGGCG-----------AGA---------ACCG-----------UGCGgUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 21904 0.66 0.4133
Target:  5'- -aCGGCCGCcgcaUCgcgcGGC-CGCCGcGCGg -3'
miRNA:   3'- cgGCCGGCG----AGaa--CCGuGCGGUuCGC- -5'
24154 3' -60.2 NC_005263.2 + 34366 0.66 0.4133
Target:  5'- gGCCuGGCCGC-CggcGGUaACGCCGcgAGCa -3'
miRNA:   3'- -CGG-CCGGCGaGaa-CCG-UGCGGU--UCGc -5'
24154 3' -60.2 NC_005263.2 + 6555 0.66 0.4133
Target:  5'- cGCaucGCCGC-CacGGCGCGCCGcGCGu -3'
miRNA:   3'- -CGgc-CGGCGaGaaCCGUGCGGUuCGC- -5'
24154 3' -60.2 NC_005263.2 + 15478 0.66 0.4133
Target:  5'- uGCCGuGCUGCggc-GGCGCGgUGAGCa -3'
miRNA:   3'- -CGGC-CGGCGagaaCCGUGCgGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 24069 0.66 0.4133
Target:  5'- uGUCGGCCGUgCUgauccaGC-UGCCGAGCGc -3'
miRNA:   3'- -CGGCCGGCGaGAac----CGuGCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 31383 0.66 0.404185
Target:  5'- uGCgGGCUGCUCgcgcgguaGGUGCGCUGcAGCu -3'
miRNA:   3'- -CGgCCGGCGAGaa------CCGUGCGGU-UCGc -5'
24154 3' -60.2 NC_005263.2 + 24789 0.66 0.404185
Target:  5'- cGUCGGCgGCUCgccgGGCGuCGgCGGcGCGu -3'
miRNA:   3'- -CGGCCGgCGAGaa--CCGU-GCgGUU-CGC- -5'
24154 3' -60.2 NC_005263.2 + 15660 0.66 0.395199
Target:  5'- aCCGGaucgacgaCUGCgCUUGGCGUGCCAagAGCGg -3'
miRNA:   3'- cGGCC--------GGCGaGAACCGUGCGGU--UCGC- -5'
24154 3' -60.2 NC_005263.2 + 20579 0.66 0.395199
Target:  5'- uGCCGGCCGUgccgacgGGCACcGCgAccGGCu -3'
miRNA:   3'- -CGGCCGGCGagaa---CCGUG-CGgU--UCGc -5'
24154 3' -60.2 NC_005263.2 + 27453 0.66 0.395199
Target:  5'- -aCGGCCGCgacgagcGGCGCGgCCAcuGCGg -3'
miRNA:   3'- cgGCCGGCGagaa---CCGUGC-GGUu-CGC- -5'
24154 3' -60.2 NC_005263.2 + 15352 0.66 0.386342
Target:  5'- cGUCGGUCGCa-UUGcGC-CGCgCAAGCGg -3'
miRNA:   3'- -CGGCCGGCGagAAC-CGuGCG-GUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 3434 0.66 0.386342
Target:  5'- -aUGGCCGCcgacuUCUUcGGCGCGCgCGAcGCa -3'
miRNA:   3'- cgGCCGGCG-----AGAA-CCGUGCG-GUU-CGc -5'
24154 3' -60.2 NC_005263.2 + 26968 0.66 0.386342
Target:  5'- uGUCGGaCUGCagUCcu-GCGCGCCGAGCa -3'
miRNA:   3'- -CGGCC-GGCG--AGaacCGUGCGGUUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.