miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24155 5' -55.1 NC_005263.2 + 30442 0.66 0.728485
Target:  5'- aGCgcgaGCAGCGUGag-CGCG-GCGGCc -3'
miRNA:   3'- -CGag--UGUUGCACgcaGUGCaCGCCGc -5'
24155 5' -55.1 NC_005263.2 + 44404 0.66 0.717811
Target:  5'- cGCgCGCGGCauugGCGUCgACGUcgaaGCGGCa -3'
miRNA:   3'- -CGaGUGUUGca--CGCAG-UGCA----CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 26984 0.66 0.713517
Target:  5'- gGCUgCAguGCGgaaagugggguagGCGUCAuggucaguUGUGCGGCGu -3'
miRNA:   3'- -CGA-GUguUGCa------------CGCAGU--------GCACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 10864 0.66 0.713517
Target:  5'- gGCgUCGCGGCGgaacucggcaccgGCG-CGCGUcgugaGCGGCGu -3'
miRNA:   3'- -CG-AGUGUUGCa------------CGCaGUGCA-----CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 31303 0.66 0.707052
Target:  5'- cGCcCACcgUGUGCGcgCAUGUgccuucugcaGCGGCGg -3'
miRNA:   3'- -CGaGUGuuGCACGCa-GUGCA----------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 38855 0.66 0.707052
Target:  5'- aCUCG-AGCG-GCGUCACG-GuCGGCa -3'
miRNA:   3'- cGAGUgUUGCaCGCAGUGCaC-GCCGc -5'
24155 5' -55.1 NC_005263.2 + 43155 0.66 0.707052
Target:  5'- aCUCAgu-CGUcGCGcUgGCGUGCGGCa -3'
miRNA:   3'- cGAGUguuGCA-CGC-AgUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 30239 0.66 0.707052
Target:  5'- cGUUCGCGGCGaaGCGUgCGCGguagucGuCGGCGa -3'
miRNA:   3'- -CGAGUGUUGCa-CGCA-GUGCa-----C-GCCGC- -5'
24155 5' -55.1 NC_005263.2 + 42001 0.66 0.707052
Target:  5'- aGCaCAUGACGUGCcggCA-GUGCGGCc -3'
miRNA:   3'- -CGaGUGUUGCACGca-GUgCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 27455 0.66 0.69622
Target:  5'- gGC-CGCGACGaGCGgCGCGgccacUGCGGCc -3'
miRNA:   3'- -CGaGUGUUGCaCGCaGUGC-----ACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 14436 0.66 0.686417
Target:  5'- uGCg-ACGGCGUGCGcgCGCGccucuuucgagccgaGCGGCGg -3'
miRNA:   3'- -CGagUGUUGCACGCa-GUGCa--------------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 17185 0.66 0.685325
Target:  5'- aGCUCGCGGCGUacGcCGUCGCcgcgcucgacucGUGCacgcugcaGGCGa -3'
miRNA:   3'- -CGAGUGUUGCA--C-GCAGUG------------CACG--------CCGC- -5'
24155 5' -55.1 NC_005263.2 + 13323 0.66 0.685325
Target:  5'- gGCaUCGCGAgcUGCGUCAUGcugaUGCcGGCGa -3'
miRNA:   3'- -CG-AGUGUUgcACGCAGUGC----ACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 25701 0.66 0.674379
Target:  5'- gGCgagCACGGCG-GCGcgUACGUucGCGGCc -3'
miRNA:   3'- -CGa--GUGUUGCaCGCa-GUGCA--CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 22665 0.66 0.674379
Target:  5'- --cCGCAAuauccCGUGCGguuCGUGCGGCc -3'
miRNA:   3'- cgaGUGUU-----GCACGCaguGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 1149 0.66 0.674379
Target:  5'- cGCUCGaaaguaGUGCGcC-CGUcGCGGCGa -3'
miRNA:   3'- -CGAGUguug--CACGCaGuGCA-CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 30897 0.67 0.663392
Target:  5'- cGCcUGCAGCGUGCacgaGUCGaGcGCGGCGa -3'
miRNA:   3'- -CGaGUGUUGCACG----CAGUgCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 38498 0.67 0.663392
Target:  5'- cGCUCACGcagauCG-GCGUCgACGUGUcGCa -3'
miRNA:   3'- -CGAGUGUu----GCaCGCAG-UGCACGcCGc -5'
24155 5' -55.1 NC_005263.2 + 27364 0.67 0.641342
Target:  5'- gGC-CGcCAGCGaGCGgCGCG-GCGGCGg -3'
miRNA:   3'- -CGaGU-GUUGCaCGCaGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 12161 0.67 0.638029
Target:  5'- uGCaCGCAGCGUcaacgaucgcggccGUGUCGCGaugaagcggaUGCGGCa -3'
miRNA:   3'- -CGaGUGUUGCA--------------CGCAGUGC----------ACGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.