miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 5' -58.5 NC_005263.2 + 36086 0.66 0.558896
Target:  5'- gGCGCaagcuUgaGCGCGCCG-UCGCGu -3'
miRNA:   3'- gCGCGgcu--AgaCGCGCGGCaAGUGCc -5'
24160 5' -58.5 NC_005263.2 + 30356 0.66 0.558896
Target:  5'- gCGCgGCCGcgCUGCcgccgGCGCCGagUGCGa -3'
miRNA:   3'- -GCG-CGGCuaGACG-----CGCGGCaaGUGCc -5'
24160 5' -58.5 NC_005263.2 + 26875 0.66 0.558896
Target:  5'- cCGCGCCGucgaUGCGaaaGCCGgUCgACGa -3'
miRNA:   3'- -GCGCGGCuag-ACGCg--CGGCaAG-UGCc -5'
24160 5' -58.5 NC_005263.2 + 37375 0.66 0.558896
Target:  5'- uGCGCuCGAgUCUGCGuCGCCcuggcugCGCGa -3'
miRNA:   3'- gCGCG-GCU-AGACGC-GCGGcaa----GUGCc -5'
24160 5' -58.5 NC_005263.2 + 32668 0.66 0.558896
Target:  5'- uCGCGCUGc-CU-CGCGCCGUaccugUACGGc -3'
miRNA:   3'- -GCGCGGCuaGAcGCGCGGCAa----GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 3811 0.66 0.548399
Target:  5'- aGUGUCGAUCaGCGCGUauuUGUacgUGCGGg -3'
miRNA:   3'- gCGCGGCUAGaCGCGCG---GCAa--GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 5912 0.66 0.548399
Target:  5'- aGCGCCcg---GCGCGgCGUgcgUACGGa -3'
miRNA:   3'- gCGCGGcuagaCGCGCgGCAa--GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 29174 0.66 0.548399
Target:  5'- gCGCGCuCGAgcgCU-CGUGCCG--CGCGGu -3'
miRNA:   3'- -GCGCG-GCUa--GAcGCGCGGCaaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 23071 0.66 0.548399
Target:  5'- aGC-CCGGUCuUGCugGCGCUGUUgGCGu -3'
miRNA:   3'- gCGcGGCUAG-ACG--CGCGGCAAgUGCc -5'
24160 5' -58.5 NC_005263.2 + 1522 0.66 0.548399
Target:  5'- gGCGUCGAUgaGCagcuuGUGCCGUUCGauGc -3'
miRNA:   3'- gCGCGGCUAgaCG-----CGCGGCAAGUgcC- -5'
24160 5' -58.5 NC_005263.2 + 24075 0.66 0.546307
Target:  5'- cCGUGCUGAUCcagcugccgaGCGCGUCGgcacuuugcagCGCGGc -3'
miRNA:   3'- -GCGCGGCUAGa---------CGCGCGGCaa---------GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 41782 0.66 0.537965
Target:  5'- gGCGCgGGcgaCUcGCGCGCCGgacUAUGGg -3'
miRNA:   3'- gCGCGgCUa--GA-CGCGCGGCaa-GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 11803 0.66 0.537965
Target:  5'- aCGCGCCGGUCgucacuucGCGCGCgaaCGUgu-CGa -3'
miRNA:   3'- -GCGCGGCUAGa-------CGCGCG---GCAaguGCc -5'
24160 5' -58.5 NC_005263.2 + 46086 0.66 0.537965
Target:  5'- gGCGCCGuuaUGCGCcGCUGcggauuuggCGCGGc -3'
miRNA:   3'- gCGCGGCuagACGCG-CGGCaa-------GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 874 0.66 0.537965
Target:  5'- uCGUGCCGGcCgGCGCuUCGUUCagcGCGGc -3'
miRNA:   3'- -GCGCGGCUaGaCGCGcGGCAAG---UGCC- -5'
24160 5' -58.5 NC_005263.2 + 37722 0.66 0.537965
Target:  5'- aCGUGCCGGUCaUGCGCucgggagacGCUG---ACGGg -3'
miRNA:   3'- -GCGCGGCUAG-ACGCG---------CGGCaagUGCC- -5'
24160 5' -58.5 NC_005263.2 + 18316 0.66 0.537965
Target:  5'- aCGCGCCGGaaaUCUaCGaCGCCGacggCACGc -3'
miRNA:   3'- -GCGCGGCU---AGAcGC-GCGGCaa--GUGCc -5'
24160 5' -58.5 NC_005263.2 + 35988 0.66 0.527599
Target:  5'- aGCG-CGAUCUGUGCauucagGCCGUcgagcaccgugcUCGCGa -3'
miRNA:   3'- gCGCgGCUAGACGCG------CGGCA------------AGUGCc -5'
24160 5' -58.5 NC_005263.2 + 18415 0.66 0.527599
Target:  5'- uGCGCaCGAUcCUGa-CGCCGUUcCACuGGa -3'
miRNA:   3'- gCGCG-GCUA-GACgcGCGGCAA-GUG-CC- -5'
24160 5' -58.5 NC_005263.2 + 47228 0.66 0.527599
Target:  5'- cCGCGCUGAaCgaaGCGCCGgccggCACGa -3'
miRNA:   3'- -GCGCGGCUaGacgCGCGGCaa---GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.