miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 44650 0.65 0.786445
Target:  5'- cGAGCUGCgccUCGAuGCGUcgcgcgcgccgaaGAaGUCGGCGGc -3'
miRNA:   3'- -CUUGACG---AGCU-CGCG-------------CUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 32136 0.66 0.777343
Target:  5'- aGAGCaUGUUCGAGCccuuguccgcccGCG-UGUCGuGCGAc -3'
miRNA:   3'- -CUUG-ACGAGCUCG------------CGCuACAGC-UGCU- -5'
24164 3' -53.8 NC_005263.2 + 15780 0.66 0.777343
Target:  5'- cAGCUGCUCGAcgaccacuGCGCGcUGcUCGucCGAc -3'
miRNA:   3'- cUUGACGAGCU--------CGCGCuAC-AGCu-GCU- -5'
24164 3' -53.8 NC_005263.2 + 19826 0.66 0.777343
Target:  5'- -uACUGCacaaggugagUCGcGCGCGA--UCGACGAu -3'
miRNA:   3'- cuUGACG----------AGCuCGCGCUacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 10063 0.66 0.777343
Target:  5'- -cGCUGCaugCGccuGCGCGuuuUGcUCGACGAg -3'
miRNA:   3'- cuUGACGa--GCu--CGCGCu--AC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 13056 0.66 0.776324
Target:  5'- uGAugUGCUCGguuucacgGGCGUgucugccGGUGUCgGACGGc -3'
miRNA:   3'- -CUugACGAGC--------UCGCG-------CUACAG-CUGCU- -5'
24164 3' -53.8 NC_005263.2 + 1930 0.66 0.756678
Target:  5'- --uCUGCaCGAGCGCGccGgcacCGGCGAc -3'
miRNA:   3'- cuuGACGaGCUCGCGCuaCa---GCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 43043 0.66 0.756678
Target:  5'- -cGCUGUUUG-GCGCGAcGcCGACGu -3'
miRNA:   3'- cuUGACGAGCuCGCGCUaCaGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30536 0.66 0.756678
Target:  5'- cGAGCaGCUCGAuGCGC--UGcUCGACGu -3'
miRNA:   3'- -CUUGaCGAGCU-CGCGcuAC-AGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 43376 0.66 0.756678
Target:  5'- uGGCgUGCUCGcgGGCGCGAcGUacccgGACGAg -3'
miRNA:   3'- cUUG-ACGAGC--UCGCGCUaCAg----CUGCU- -5'
24164 3' -53.8 NC_005263.2 + 31285 0.66 0.756678
Target:  5'- uGAAC-GCgUCGAGCGCG---UCGACGc -3'
miRNA:   3'- -CUUGaCG-AGCUCGCGCuacAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30417 0.66 0.750371
Target:  5'- cGGCUGCagcaggucggugcggUCGAGCGCGAgcagcgUGagcgCGGCGGc -3'
miRNA:   3'- cUUGACG---------------AGCUCGCGCU------ACa---GCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 36092 0.66 0.746142
Target:  5'- ----aGCUUGAGCGCGccGUCG-CGu -3'
miRNA:   3'- cuugaCGAGCUCGCGCuaCAGCuGCu -5'
24164 3' -53.8 NC_005263.2 + 30940 0.66 0.746142
Target:  5'- cGAGCUGCgcauucggcuucUCGGccGUGcCGAcGUCGACGAc -3'
miRNA:   3'- -CUUGACG------------AGCU--CGC-GCUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 9655 0.66 0.735486
Target:  5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3'
miRNA:   3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5'
24164 3' -53.8 NC_005263.2 + 33095 0.67 0.724722
Target:  5'- uGAuCUGCUUGcGCGCGu--UCGGCGGa -3'
miRNA:   3'- -CUuGACGAGCuCGCGCuacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 31092 0.67 0.713863
Target:  5'- -cGCUGCUCGAGCGauaCGAacgcuUCGACa- -3'
miRNA:   3'- cuUGACGAGCUCGC---GCUac---AGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 41349 0.67 0.702921
Target:  5'- cGAGCUcGCcCGGcGCGCGAUGgacgUGACGc -3'
miRNA:   3'- -CUUGA-CGaGCU-CGCGCUACa---GCUGCu -5'
24164 3' -53.8 NC_005263.2 + 36556 0.67 0.702921
Target:  5'- aAGCUcgUCGAGCGCGGcaaggUGaCGACGAa -3'
miRNA:   3'- cUUGAcgAGCUCGCGCU-----ACaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 5490 0.67 0.702921
Target:  5'- -uGCUGCUCGAcaggggGCGCGgcGagGAUGGu -3'
miRNA:   3'- cuUGACGAGCU------CGCGCuaCagCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.