miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 15592 0.66 0.437771
Target:  5'- aGCGCGGCCGgugcacgagcgauaCGaacgCGGCGAaGUUCGu -3'
miRNA:   3'- gCGCGUCGGC--------------GCa---GCCGCUaCAGGCu -5'
24166 3' -60.7 NC_005263.2 + 30370 0.66 0.431246
Target:  5'- uCGUGCAG-CGCuUCGGgGAUGUgCGc -3'
miRNA:   3'- -GCGCGUCgGCGcAGCCgCUACAgGCu -5'
24166 3' -60.7 NC_005263.2 + 18932 0.66 0.431246
Target:  5'- nGCGCGGCacgaGCGcUCGaGCGcgccgGUUCGAg -3'
miRNA:   3'- gCGCGUCGg---CGC-AGC-CGCua---CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 12579 0.66 0.431246
Target:  5'- cCGCGC-GCCGCcgggcgcaGUCGGCGcgccaGUGUCa-- -3'
miRNA:   3'- -GCGCGuCGGCG--------CAGCCGC-----UACAGgcu -5'
24166 3' -60.7 NC_005263.2 + 39144 0.66 0.412922
Target:  5'- gGCgGCA-CCGUGUCGGCGAcGUugcUCGAc -3'
miRNA:   3'- gCG-CGUcGGCGCAGCCGCUaCA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 26930 0.66 0.412922
Target:  5'- gCGCGCGuCCGCGUCcgccccguGGCGuagccgccggGUGUCgGAc -3'
miRNA:   3'- -GCGCGUcGGCGCAG--------CCGC----------UACAGgCU- -5'
24166 3' -60.7 NC_005263.2 + 47298 0.66 0.395086
Target:  5'- aGCGCAGuCCGCuGUCGaCGGacUGggugCCGAc -3'
miRNA:   3'- gCGCGUC-GGCG-CAGCcGCU--ACa---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 2880 0.66 0.395086
Target:  5'- aCGuCGCAGCgGCGa-GGCuGAUGUuggCCGAg -3'
miRNA:   3'- -GC-GCGUCGgCGCagCCG-CUACA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 24026 0.66 0.395086
Target:  5'- cCGC-CGGCCGgaUCGGuCGAcgUGUCCGGg -3'
miRNA:   3'- -GCGcGUCGGCgcAGCC-GCU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 17150 0.66 0.395086
Target:  5'- --aGCGGUCGaCGUC-GCGGUGUUCGGc -3'
miRNA:   3'- gcgCGUCGGC-GCAGcCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 20286 0.66 0.394208
Target:  5'- aCGCGUGccgcgaaggugacGCCGCGaucacgaCGGCGAUGUaCCGc -3'
miRNA:   3'- -GCGCGU-------------CGGCGCa------GCCGCUACA-GGCu -5'
24166 3' -60.7 NC_005263.2 + 34569 0.67 0.385491
Target:  5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3'
miRNA:   3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5'
24166 3' -60.7 NC_005263.2 + 33160 0.67 0.377756
Target:  5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3'
miRNA:   3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 14072 0.67 0.377756
Target:  5'- aGCGC-GCCGCGcCGGCccAUGUCgGc -3'
miRNA:   3'- gCGCGuCGGCGCaGCCGc-UACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 44669 0.67 0.377756
Target:  5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5'
24166 3' -60.7 NC_005263.2 + 14014 0.67 0.369285
Target:  5'- aCGCGCgaGGCgcaGCGaCGGCGAcgGUUCGGc -3'
miRNA:   3'- -GCGCG--UCGg--CGCaGCCGCUa-CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 12179 0.67 0.369285
Target:  5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3'
miRNA:   3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5'
24166 3' -60.7 NC_005263.2 + 18610 0.67 0.360945
Target:  5'- aCGcCGCAGCgGCGUucgCGGCaGGUGgcaacCCGGg -3'
miRNA:   3'- -GC-GCGUCGgCGCA---GCCG-CUACa----GGCU- -5'
24166 3' -60.7 NC_005263.2 + 9526 0.67 0.360945
Target:  5'- uCGUGCGGCCGUGcgCGGCagcGaCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCa-GCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 21916 0.67 0.360945
Target:  5'- uCGCGCGGCCGCcgcgCGGCcgcaGAccGUCCu- -3'
miRNA:   3'- -GCGCGUCGGCGca--GCCG----CUa-CAGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.