miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 47298 0.66 0.395086
Target:  5'- aGCGCAGuCCGCuGUCGaCGGacUGggugCCGAc -3'
miRNA:   3'- gCGCGUC-GGCG-CAGCcGCU--ACa---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 46684 0.69 0.291896
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGAc -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 44805 0.68 0.33202
Target:  5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3'
miRNA:   3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 44669 0.67 0.377756
Target:  5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5'
24166 3' -60.7 NC_005263.2 + 43052 0.69 0.271293
Target:  5'- gGCGCgacaauGGcCCGCGUUGGCGG-GUuuGAu -3'
miRNA:   3'- gCGCG------UC-GGCGCAGCCGCUaCAggCU- -5'
24166 3' -60.7 NC_005263.2 + 41549 0.69 0.258218
Target:  5'- aCGCGCGgcgcGCCGUGgCGGCGAUG--CGAg -3'
miRNA:   3'- -GCGCGU----CGGCGCaGCCGCUACagGCU- -5'
24166 3' -60.7 NC_005263.2 + 40918 0.72 0.173249
Target:  5'- gGCGCAGCCGCacauacccggguaucGcagCGGCGAUGgCCGc -3'
miRNA:   3'- gCGCGUCGGCG---------------Ca--GCCGCUACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 40522 0.67 0.352737
Target:  5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3'
miRNA:   3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 39994 0.76 0.084855
Target:  5'- uGgGCcuGCCGcCGaCGGCGAUGUCCGAu -3'
miRNA:   3'- gCgCGu-CGGC-GCaGCCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 39724 0.68 0.299031
Target:  5'- gGCGCgGGCCGCGUCgaccuGGCGAgcgaaCUGAa -3'
miRNA:   3'- gCGCG-UCGGCGCAG-----CCGCUaca--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 39144 0.66 0.412922
Target:  5'- gGCgGCA-CCGUGUCGGCGAcGUugcUCGAc -3'
miRNA:   3'- gCG-CGUcGGCGCAGCCGCUaCA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 38564 0.68 0.321241
Target:  5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 37608 0.69 0.278028
Target:  5'- aCGCGCugguuuaucAGCCGuCG-CGGuUGAUGUUCGAa -3'
miRNA:   3'- -GCGCG---------UCGGC-GCaGCC-GCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 37419 0.72 0.179252
Target:  5'- uCGCGCGGCCGUccucgucgucauacGUCGGCGcgcgcgGUCUGc -3'
miRNA:   3'- -GCGCGUCGGCG--------------CAGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 36215 0.69 0.291896
Target:  5'- gCGCGCAggcgcccggcGCCGCGUCGucaGAuaUGUUCGAc -3'
miRNA:   3'- -GCGCGU----------CGGCGCAGCcg-CU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 34569 0.67 0.385491
Target:  5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3'
miRNA:   3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5'
24166 3' -60.7 NC_005263.2 + 33160 0.67 0.377756
Target:  5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3'
miRNA:   3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 32752 0.7 0.237776
Target:  5'- uGCGCAguacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 32744 0.67 0.352737
Target:  5'- aCGCGCuGCCGCuugcgCGGCGcaAUGcgaCCGAc -3'
miRNA:   3'- -GCGCGuCGGCGca---GCCGC--UACa--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 32094 0.7 0.239577
Target:  5'- aCGUGCGGCgGCGUCGGUGcga-UCGAg -3'
miRNA:   3'- -GCGCGUCGgCGCAGCCGCuacaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.