Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24169 | 3' | -57.8 | NC_005263.2 | + | 34729 | 0.66 | 0.522473 |
Target: 5'- -aUCGuGUCc---CGGCCGGUaGGCGACa -3' miRNA: 3'- uaAGC-CGGauauGCCGGCCG-CCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 36167 | 0.66 | 0.522473 |
Target: 5'- --aCGGCCUGcGCGaCCGGU-GCGACc -3' miRNA: 3'- uaaGCCGGAUaUGCcGGCCGcCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 46116 | 0.66 | 0.511882 |
Target: 5'- --gCGGCCUAggACaGUCGGUGaGCAAa -3' miRNA: 3'- uaaGCCGGAUa-UGcCGGCCGC-CGUUg -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 13550 | 0.66 | 0.501381 |
Target: 5'- uUUCGGCacggUGUACGGgCG-CGGCAcgaGCg -3' miRNA: 3'- uAAGCCGg---AUAUGCCgGCcGCCGU---UG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 15353 | 0.66 | 0.522473 |
Target: 5'- -gUCGGUCgcauUGC-GCCGcgcaaGCGGCAGCg -3' miRNA: 3'- uaAGCCGGau--AUGcCGGC-----CGCCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 35850 | 0.66 | 0.490976 |
Target: 5'- -gUCGGCaaaaaacaACGGCU-GCGGCAGCc -3' miRNA: 3'- uaAGCCGgaua----UGCCGGcCGCCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 3301 | 0.66 | 0.470475 |
Target: 5'- uUUCuuGCCUGggcGCGGCCGcGCGGUguucAACg -3' miRNA: 3'- uAAGc-CGGAUa--UGCCGGC-CGCCG----UUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 5785 | 0.66 | 0.470475 |
Target: 5'- -gUCGGCaccuUGCGGCCGGUcGCu-- -3' miRNA: 3'- uaAGCCGgau-AUGCCGGCCGcCGuug -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 10389 | 0.66 | 0.470475 |
Target: 5'- --aCGcGCCgggcCGGCCGGCGaGCGGg -3' miRNA: 3'- uaaGC-CGGauauGCCGGCCGC-CGUUg -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 4541 | 0.66 | 0.480672 |
Target: 5'- --gCGGCgCUGUGCcGaCGGCGGCAu- -3' miRNA: 3'- uaaGCCG-GAUAUGcCgGCCGCCGUug -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 43226 | 0.66 | 0.511882 |
Target: 5'- --gCGcGCgCUAcAUGGUgagCGGCGGCAGCg -3' miRNA: 3'- uaaGC-CG-GAUaUGCCG---GCCGCCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 43076 | 0.66 | 0.511882 |
Target: 5'- -gUCGGCCgccg-GGCCGGCugucgagcGCGGCg -3' miRNA: 3'- uaAGCCGGauaugCCGGCCGc-------CGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 38252 | 0.66 | 0.501381 |
Target: 5'- --aCGaGCUgaaucCGGCCGGCGGUGAa -3' miRNA: 3'- uaaGC-CGGauau-GCCGGCCGCCGUUg -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 24785 | 0.66 | 0.501381 |
Target: 5'- --gCGGCgUcgGCGGCucgccgggcguCGGCGGCGc- -3' miRNA: 3'- uaaGCCGgAuaUGCCG-----------GCCGCCGUug -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 33947 | 0.66 | 0.490976 |
Target: 5'- --cCGGCCgc--CGGCCcgaagucgccaaGGCGGCcGCg -3' miRNA: 3'- uaaGCCGGauauGCCGG------------CCGCCGuUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 24850 | 0.66 | 0.480672 |
Target: 5'- ---gGuGCCgGUGCGccaGCCGGCGGCuACg -3' miRNA: 3'- uaagC-CGGaUAUGC---CGGCCGCCGuUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 23315 | 0.66 | 0.480672 |
Target: 5'- --gCGGCCa----GGCgGGCGGCAc- -3' miRNA: 3'- uaaGCCGGauaugCCGgCCGCCGUug -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 14451 | 0.66 | 0.480672 |
Target: 5'- --gCGcGCCUcuuuCGaGCCGaGCGGCGGCa -3' miRNA: 3'- uaaGC-CGGAuau-GC-CGGC-CGCCGUUG- -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 18163 | 0.67 | 0.42124 |
Target: 5'- -aUCGGCg---GCGGCguUGGCGGCAu- -3' miRNA: 3'- uaAGCCGgauaUGCCG--GCCGCCGUug -5' |
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24169 | 3' | -57.8 | NC_005263.2 | + | 33447 | 0.67 | 0.43084 |
Target: 5'- -gUCGGCgUGUGgGGCaagaCGGCGGaCGAg -3' miRNA: 3'- uaAGCCGgAUAUgCCG----GCCGCC-GUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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