miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 28987 0.66 0.61424
Target:  5'- cCCGGCgaugCGCu----CGGCGCGGc- -3'
miRNA:   3'- -GGCCGaaa-GCGuagcuGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 30225 0.66 0.61424
Target:  5'- gCCGGUcgacugaucgUUCGCggCGaaGCGuGCGCGGUa -3'
miRNA:   3'- -GGCCGa---------AAGCGuaGC--UGC-CGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 19872 0.66 0.592618
Target:  5'- aCGGCga--GCG-CGGCGaGCGCGGc- -3'
miRNA:   3'- gGCCGaaagCGUaGCUGC-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 2030 0.66 0.571125
Target:  5'- aCGGCcgcaUCGaucaCGUCGACGcccGCGCGGUa -3'
miRNA:   3'- gGCCGaa--AGC----GUAGCUGC---CGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 29056 0.66 0.61424
Target:  5'- gCCGcGCgg-CGCGUCcucggGGCGGCGCGc-- -3'
miRNA:   3'- -GGC-CGaaaGCGUAG-----CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 41357 0.66 0.581851
Target:  5'- cCCGGCg--CGCgAUgGACGugacGCGCGaGUGu -3'
miRNA:   3'- -GGCCGaaaGCG-UAgCUGC----CGCGC-CAC- -5'
24178 5' -57.2 NC_005263.2 + 34371 0.66 0.580777
Target:  5'- aCCGGCag-UGCccCGGuacccguCGGCGUGGUGa -3'
miRNA:   3'- -GGCCGaaaGCGuaGCU-------GCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 24545 0.66 0.592618
Target:  5'- gCGGCgg-CGCGggCGGCGGCGgcugcgccaCGGUc -3'
miRNA:   3'- gGCCGaaaGCGUa-GCUGCCGC---------GCCAc -5'
24178 5' -57.2 NC_005263.2 + 37565 0.66 0.590462
Target:  5'- aCGGCcgacaacccgCGCAaggaauaugUCGGCGGCuCGGUGc -3'
miRNA:   3'- gGCCGaaa-------GCGU---------AGCUGCCGcGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 30697 0.66 0.61424
Target:  5'- gCCGGCUucgcUUUGCAguaGCGGCaGUGGUc -3'
miRNA:   3'- -GGCCGA----AAGCGUagcUGCCG-CGCCAc -5'
24178 5' -57.2 NC_005263.2 + 7689 0.66 0.603417
Target:  5'- aCCGGg-UUCGaGUCGGCcGCGCGGc- -3'
miRNA:   3'- -GGCCgaAAGCgUAGCUGcCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 21183 0.67 0.539267
Target:  5'- gCCGGa---CGCGgacgCGcGCGGCGCGGg- -3'
miRNA:   3'- -GGCCgaaaGCGUa---GC-UGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 45153 0.67 0.549826
Target:  5'- cCUGGCUcUUgGCuUCGGCGGCgGCGaUGg -3'
miRNA:   3'- -GGCCGA-AAgCGuAGCUGCCG-CGCcAC- -5'
24178 5' -57.2 NC_005263.2 + 39349 0.67 0.528778
Target:  5'- gCUGGCagccgaUUCGCucggCGGCGGCGCGc-- -3'
miRNA:   3'- -GGCCGa-----AAGCGua--GCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 37959 0.67 0.549826
Target:  5'- aCCGGCcgaugcCGCGcCGGCuGGCGCugaaGGUGg -3'
miRNA:   3'- -GGCCGaaa---GCGUaGCUG-CCGCG----CCAC- -5'
24178 5' -57.2 NC_005263.2 + 9555 0.67 0.560447
Target:  5'- gCGGCgcUCGCGgcuugccaGGCGGCGCGc-- -3'
miRNA:   3'- gGCCGaaAGCGUag------CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 6615 0.67 0.528778
Target:  5'- uUCGGCgg-CGCGcu--CGGCGCGGUc -3'
miRNA:   3'- -GGCCGaaaGCGUagcuGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 16417 0.67 0.518365
Target:  5'- gCGGUacUCgGCGUCGGCgcuGGCGCGGc- -3'
miRNA:   3'- gGCCGaaAG-CGUAGCUG---CCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 39081 0.67 0.525646
Target:  5'- gCCGGCUcgccgUCGCG-CGGCacgaaaauccugugGGaCGUGGUGg -3'
miRNA:   3'- -GGCCGAa----AGCGUaGCUG--------------CC-GCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 28104 0.67 0.560447
Target:  5'- gCGGCcgaUCGCGUCguuGACGGCaGUGGc- -3'
miRNA:   3'- gGCCGaa-AGCGUAG---CUGCCG-CGCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.