miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 969 0.68 0.508035
Target:  5'- gCGGCggucgccugCGCGUCgGACGGCGCu--- -3'
miRNA:   3'- gGCCGaaa------GCGUAG-CUGCCGCGccac -5'
24178 5' -57.2 NC_005263.2 + 1211 0.67 0.549826
Target:  5'- uCCGGCgucagaugCGCAUCgggGACGaGCGCGaUGu -3'
miRNA:   3'- -GGCCGaaa-----GCGUAG---CUGC-CGCGCcAC- -5'
24178 5' -57.2 NC_005263.2 + 2030 0.66 0.571125
Target:  5'- aCGGCcgcaUCGaucaCGUCGACGcccGCGCGGUa -3'
miRNA:   3'- gGCCGaa--AGC----GUAGCUGC---CGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 2645 0.67 0.528778
Target:  5'- aUCGcGCUUgccggCGUAUCGGCGGCGacacCGGc- -3'
miRNA:   3'- -GGC-CGAAa----GCGUAGCUGCCGC----GCCac -5'
24178 5' -57.2 NC_005263.2 + 3192 0.7 0.3834
Target:  5'- gCC-GCUg-CGCGUCGGCGaGCGCGGc- -3'
miRNA:   3'- -GGcCGAaaGCGUAGCUGC-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 6615 0.67 0.528778
Target:  5'- uUCGGCgg-CGCGcu--CGGCGCGGUc -3'
miRNA:   3'- -GGCCGaaaGCGUagcuGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 7689 0.66 0.603417
Target:  5'- aCCGGg-UUCGaGUCGGCcGCGCGGc- -3'
miRNA:   3'- -GGCCgaAAGCgUAGCUGcCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 9212 0.68 0.457808
Target:  5'- gCGGCgcUCGUA-CGGC-GCGCGGUa -3'
miRNA:   3'- gGCCGaaAGCGUaGCUGcCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 9480 0.68 0.476594
Target:  5'- gCGGCUucaUUCGCGcCGGCGcuauccaucgcguGCGCGGg- -3'
miRNA:   3'- gGCCGA---AAGCGUaGCUGC-------------CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 9555 0.67 0.560447
Target:  5'- gCGGCgcUCGCGgcuugccaGGCGGCGCGc-- -3'
miRNA:   3'- gGCCGaaAGCGUag------CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 10885 0.7 0.357642
Target:  5'- aCCGGCg--CGCGUCGugaGCGGCGUa--- -3'
miRNA:   3'- -GGCCGaaaGCGUAGC---UGCCGCGccac -5'
24178 5' -57.2 NC_005263.2 + 11515 0.68 0.457808
Target:  5'- aCUGGUcgcgCGCGaugaaGGCGGCGCGGUu -3'
miRNA:   3'- -GGCCGaaa-GCGUag---CUGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 12513 0.69 0.4423
Target:  5'- gCCGGCUucgcgcggguuggcgUUCGCAUucacguucgCGGCGGCcgGCGGc- -3'
miRNA:   3'- -GGCCGA---------------AAGCGUA---------GCUGCCG--CGCCac -5'
24178 5' -57.2 NC_005263.2 + 12670 0.69 0.449048
Target:  5'- gCCGGCgcgccggggucgucgUUCGCGUCGAgcuugcCGGCGUaGGg- -3'
miRNA:   3'- -GGCCGa--------------AAGCGUAGCU------GCCGCG-CCac -5'
24178 5' -57.2 NC_005263.2 + 14014 0.69 0.401243
Target:  5'- aCGcGCgaggCGCAgCGACGGCGaCGGUu -3'
miRNA:   3'- gGC-CGaaa-GCGUaGCUGCCGC-GCCAc -5'
24178 5' -57.2 NC_005263.2 + 14159 0.67 0.560447
Target:  5'- uUGGCgacUUCGgGcCGGCGGC-CGGUGu -3'
miRNA:   3'- gGCCGa--AAGCgUaGCUGCCGcGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 15479 0.71 0.341156
Target:  5'- gCCGuGCUg------CGGCGGCGCGGUGa -3'
miRNA:   3'- -GGC-CGAaagcguaGCUGCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 15696 0.67 0.564712
Target:  5'- gCCGGCgagcUCGCAgcgacuacgggcgguUCGACcaGCGCGGc- -3'
miRNA:   3'- -GGCCGaa--AGCGU---------------AGCUGc-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 16417 0.67 0.518365
Target:  5'- gCGGUacUCgGCGUCGGCgcuGGCGCGGc- -3'
miRNA:   3'- gGCCGaaAG-CGUAGCUG---CCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 16658 0.68 0.497793
Target:  5'- -aGGCgcUCGCGUCGuuCGGCGUGa-- -3'
miRNA:   3'- ggCCGaaAGCGUAGCu-GCCGCGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.