miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 22504 0.76 0.154069
Target:  5'- gCCGGCgg-CGguUCGGCGGCuGCGGc- -3'
miRNA:   3'- -GGCCGaaaGCguAGCUGCCG-CGCCac -5'
24178 5' -57.2 NC_005263.2 + 2645 0.67 0.528778
Target:  5'- aUCGcGCUUgccggCGUAUCGGCGGCGacacCGGc- -3'
miRNA:   3'- -GGC-CGAAa----GCGUAGCUGCCGC----GCCac -5'
24178 5' -57.2 NC_005263.2 + 24307 0.67 0.528778
Target:  5'- uUGGCUcgcgcgcgUCGCAUCGGCGGuCGUaacGGg- -3'
miRNA:   3'- gGCCGAa-------AGCGUAGCUGCC-GCG---CCac -5'
24178 5' -57.2 NC_005263.2 + 29056 0.66 0.61424
Target:  5'- gCCGcGCgg-CGCGUCcucggGGCGGCGCGc-- -3'
miRNA:   3'- -GGC-CGaaaGCGUAG-----CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 29735 0.7 0.374678
Target:  5'- gCUGGCUgccuUUCaugGCGauuUCGACGGUGCGGa- -3'
miRNA:   3'- -GGCCGA----AAG---CGU---AGCUGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 14014 0.69 0.401243
Target:  5'- aCGcGCgaggCGCAgCGACGGCGaCGGUu -3'
miRNA:   3'- gGC-CGaaa-GCGUaGCUGCCGC-GCCAc -5'
24178 5' -57.2 NC_005263.2 + 12513 0.69 0.4423
Target:  5'- gCCGGCUucgcgcggguuggcgUUCGCAUucacguucgCGGCGGCcgGCGGc- -3'
miRNA:   3'- -GGCCGA---------------AAGCGUA---------GCUGCCG--CGCCac -5'
24178 5' -57.2 NC_005263.2 + 12670 0.69 0.449048
Target:  5'- gCCGGCgcgccggggucgucgUUCGCGUCGAgcuugcCGGCGUaGGg- -3'
miRNA:   3'- -GGCCGa--------------AAGCGUAGCU------GCCGCG-CCac -5'
24178 5' -57.2 NC_005263.2 + 9480 0.68 0.476594
Target:  5'- gCGGCUucaUUCGCGcCGGCGcuauccaucgcguGCGCGGg- -3'
miRNA:   3'- gGCCGA---AAGCGUaGCUGC-------------CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 20983 0.68 0.508035
Target:  5'- gCGGCUgcgcgccugCGCGUCGACGuGC-CGGc- -3'
miRNA:   3'- gGCCGAaa-------GCGUAGCUGC-CGcGCCac -5'
24178 5' -57.2 NC_005263.2 + 22210 0.68 0.497793
Target:  5'- cCCGGggcaUUUCGUcgCGACG-UGCGGUa -3'
miRNA:   3'- -GGCCg---AAAGCGuaGCUGCcGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 19746 0.68 0.457808
Target:  5'- aUCGGCgcuggCGCGcUGGCGGCGCucGUGg -3'
miRNA:   3'- -GGCCGaaa--GCGUaGCUGCCGCGc-CAC- -5'
24178 5' -57.2 NC_005263.2 + 31544 0.72 0.287851
Target:  5'- gCCGGCcUUgGCGUCGcugcccagGCGGCGCGccGUGc -3'
miRNA:   3'- -GGCCGaAAgCGUAGC--------UGCCGCGC--CAC- -5'
24178 5' -57.2 NC_005263.2 + 25699 0.68 0.497793
Target:  5'- aCGGCga--GCA-CGGCGGCGCGu-- -3'
miRNA:   3'- gGCCGaaagCGUaGCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 15479 0.71 0.341156
Target:  5'- gCCGuGCUg------CGGCGGCGCGGUGa -3'
miRNA:   3'- -GGC-CGAaagcguaGCUGCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 11515 0.68 0.457808
Target:  5'- aCUGGUcgcgCGCGaugaaGGCGGCGCGGUu -3'
miRNA:   3'- -GGCCGaaa-GCGUag---CUGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 23940 0.68 0.497793
Target:  5'- gCGGCUUgCGCGUCGugaGcGUGaCGGUGc -3'
miRNA:   3'- gGCCGAAaGCGUAGCug-C-CGC-GCCAC- -5'
24178 5' -57.2 NC_005263.2 + 6615 0.67 0.528778
Target:  5'- uUCGGCgg-CGCGcu--CGGCGCGGUc -3'
miRNA:   3'- -GGCCGaaaGCGUagcuGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 27144 0.7 0.366092
Target:  5'- aCCGGCUUUCGUGcccgCGAUGGUGuCGuUGa -3'
miRNA:   3'- -GGCCGAAAGCGUa---GCUGCCGC-GCcAC- -5'
24178 5' -57.2 NC_005263.2 + 37423 0.69 0.438469
Target:  5'- gCGGCcguccucgUCGUcauacGUCGGCGcGCGCGGUc -3'
miRNA:   3'- gGCCGaa------AGCG-----UAGCUGC-CGCGCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.