miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 21232 1.09 0.0006
Target:  5'- aCCGGCUUUCGCAUCGACGGCGCGGUGc -3'
miRNA:   3'- -GGCCGAAAGCGUAGCUGCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 22504 0.76 0.154069
Target:  5'- gCCGGCgg-CGguUCGGCGGCuGCGGc- -3'
miRNA:   3'- -GGCCGaaaGCguAGCUGCCG-CGCCac -5'
24178 5' -57.2 NC_005263.2 + 18752 0.76 0.167056
Target:  5'- aUCGGCgcgaUCGUA--GGCGGCGCGGUGc -3'
miRNA:   3'- -GGCCGaa--AGCGUagCUGCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 24794 0.73 0.241319
Target:  5'- gCGGCUcgCcggGCGUCGGCGGCGCGu-- -3'
miRNA:   3'- gGCCGAaaG---CGUAGCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 31544 0.72 0.287851
Target:  5'- gCCGGCcUUgGCGUCGcugcccagGCGGCGCGccGUGc -3'
miRNA:   3'- -GGCCGaAAgCGUAGC--------UGCCGCGC--CAC- -5'
24178 5' -57.2 NC_005263.2 + 24835 0.72 0.287851
Target:  5'- gCCGGCg---GCAaCGGCGGUGcCGGUGc -3'
miRNA:   3'- -GGCCGaaagCGUaGCUGCCGC-GCCAC- -5'
24178 5' -57.2 NC_005263.2 + 41153 0.72 0.287851
Target:  5'- aCCGGCgUUCGCG-CGGCGuGgGCGGc- -3'
miRNA:   3'- -GGCCGaAAGCGUaGCUGC-CgCGCCac -5'
24178 5' -57.2 NC_005263.2 + 27933 0.71 0.317472
Target:  5'- cCCGGCg--CGCucucGUCGAugagccggaCGGCGCGGaUGg -3'
miRNA:   3'- -GGCCGaaaGCG----UAGCU---------GCCGCGCC-AC- -5'
24178 5' -57.2 NC_005263.2 + 17313 0.71 0.333122
Target:  5'- aCGGCg--CGCGaauUCGGCccGGCGcCGGUGg -3'
miRNA:   3'- gGCCGaaaGCGU---AGCUG--CCGC-GCCAC- -5'
24178 5' -57.2 NC_005263.2 + 15479 0.71 0.341156
Target:  5'- gCCGuGCUg------CGGCGGCGCGGUGa -3'
miRNA:   3'- -GGC-CGAaagcguaGCUGCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 10885 0.7 0.357642
Target:  5'- aCCGGCg--CGCGUCGugaGCGGCGUa--- -3'
miRNA:   3'- -GGCCGaaaGCGUAGC---UGCCGCGccac -5'
24178 5' -57.2 NC_005263.2 + 17142 0.7 0.357642
Target:  5'- cUCGGCgaa-GCgGUCGACGuCGCGGUGu -3'
miRNA:   3'- -GGCCGaaagCG-UAGCUGCcGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 27144 0.7 0.366092
Target:  5'- aCCGGCUUUCGUGcccgCGAUGGUGuCGuUGa -3'
miRNA:   3'- -GGCCGAAAGCGUa---GCUGCCGC-GCcAC- -5'
24178 5' -57.2 NC_005263.2 + 29735 0.7 0.374678
Target:  5'- gCUGGCUgccuUUCaugGCGauuUCGACGGUGCGGa- -3'
miRNA:   3'- -GGCCGA----AAG---CGU---AGCUGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 31230 0.7 0.382522
Target:  5'- aCGGCUUgcaggggCGCuUCGguuccgcGCGGCGCGGc- -3'
miRNA:   3'- gGCCGAAa------GCGuAGC-------UGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 3192 0.7 0.3834
Target:  5'- gCC-GCUg-CGCGUCGGCGaGCGCGGc- -3'
miRNA:   3'- -GGcCGAaaGCGUAGCUGC-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 14014 0.69 0.401243
Target:  5'- aCGcGCgaggCGCAgCGACGGCGaCGGUu -3'
miRNA:   3'- gGC-CGaaa-GCGUaGCUGCCGC-GCCAc -5'
24178 5' -57.2 NC_005263.2 + 30415 0.69 0.401243
Target:  5'- aCCGGCUgcaGCAg-GuCGGUGCGGUc -3'
miRNA:   3'- -GGCCGAaagCGUagCuGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 27888 0.69 0.407612
Target:  5'- gCCGGCggcgCGCAgucgggcaaagcacUCGACGGCgGCGcGUc -3'
miRNA:   3'- -GGCCGaaa-GCGU--------------AGCUGCCG-CGC-CAc -5'
24178 5' -57.2 NC_005263.2 + 22055 0.69 0.410361
Target:  5'- cCCGGCUgUUGCcgCGACGaucccggguGuCGUGGUGa -3'
miRNA:   3'- -GGCCGAaAGCGuaGCUGC---------C-GCGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.