miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 46091 0.66 0.876781
Target:  5'- aUGCGGcCGugACGUCGGguaucauccgCGCcgGCg -3'
miRNA:   3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 44654 0.69 0.740858
Target:  5'- cUGCGccUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 43252 0.69 0.729837
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 42758 0.7 0.673387
Target:  5'- -cGCGAUaCGGCACGUgGuuUCGCggUGCu -3'
miRNA:   3'- aaCGCUA-GCUGUGCAgCu-AGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 41173 0.69 0.718709
Target:  5'- -gGCGGccgucgUCGAUACGUUGcgCGCUgUGCg -3'
miRNA:   3'- aaCGCU------AGCUGUGCAGCuaGCGA-AUG- -5'
24184 3' -50.9 NC_005263.2 + 40977 0.67 0.8236
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 39025 0.66 0.884723
Target:  5'- -gGcCGAUCGacccgaacugGCACGUCGAggCGC-UACa -3'
miRNA:   3'- aaC-GCUAGC----------UGUGCAGCUa-GCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 38565 0.77 0.296079
Target:  5'- -cGCGAgCGcCGCGUCGGUCGCUgccGCg -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUAGCGAa--UG- -5'
24184 3' -50.9 NC_005263.2 + 33903 0.66 0.884723
Target:  5'- -cGCGAaCGGCACGcCG-UCGCggaACg -3'
miRNA:   3'- aaCGCUaGCUGUGCaGCuAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 33810 0.66 0.899753
Target:  5'- -aGCGucgaCGGCAUGaCGAUCGCgcUGCa -3'
miRNA:   3'- aaCGCua--GCUGUGCaGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 32890 0.68 0.762525
Target:  5'- -gGCGAguuUCGugGCGUCGG-CGUcgGCg -3'
miRNA:   3'- aaCGCU---AGCugUGCAGCUaGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 32539 0.66 0.899753
Target:  5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3'
miRNA:   3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 31289 0.69 0.729837
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUaGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 30613 0.67 0.851322
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 30208 0.66 0.876781
Target:  5'- aUGCuGAUCGGCGCGccgcCGGUCGaCUg-- -3'
miRNA:   3'- aACG-CUAGCUGUGCa---GCUAGC-GAaug -5'
24184 3' -50.9 NC_005263.2 + 29589 0.71 0.604353
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 28248 0.66 0.897572
Target:  5'- -cGCGcUCGccgugaccuuguucGCAuCGUCGAUCGCgcGCg -3'
miRNA:   3'- aaCGCuAGC--------------UGU-GCAGCUAGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 28100 0.84 0.107441
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
24184 3' -50.9 NC_005263.2 + 26040 0.66 0.884723
Target:  5'- -gGCGGUUGAgCuCGUCGAgcuUCGC-UGCg -3'
miRNA:   3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 25167 0.69 0.751758
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.