miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 47724 0.69 0.378614
Target:  5'- -aCGCgCUCGGCaauucugucggccuGCAGCUGUucaaAGCGCc -3'
miRNA:   3'- aaGCG-GAGCCGcu------------UGUCGACA----UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 45555 0.66 0.569982
Target:  5'- aUCGUCUCGcGUucgcggccugGAACAGCgGUcaGGCGUa -3'
miRNA:   3'- aAGCGGAGC-CG----------CUUGUCGaCA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 45160 0.72 0.25325
Target:  5'- cUUgGCUUCGGCG-GCGGCgaUGGCGCa -3'
miRNA:   3'- -AAgCGGAGCCGCuUGUCGacAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 43250 0.67 0.494669
Target:  5'- -aCGCgCUCGGCGuAACgcucgauuGGCUGUGcGgGCg -3'
miRNA:   3'- aaGCG-GAGCCGC-UUG--------UCGACAU-CgCG- -5'
24215 5' -56.6 NC_005263.2 + 43057 0.66 0.585435
Target:  5'- -aCGCCgacgucggccaauagUCGGCcgccGGGcCGGCUGUcgAGCGCg -3'
miRNA:   3'- aaGCGG---------------AGCCG----CUU-GUCGACA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 41353 0.66 0.559006
Target:  5'- cUCGCC-CGGCGcgcgauggacguGACGcGCgaguguguacgUGUGGCGCu -3'
miRNA:   3'- aAGCGGaGCCGC------------UUGU-CG-----------ACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 40235 0.68 0.463772
Target:  5'- -cCGUCagaagaagUCGGCGGGCAcCUGgGGCGCg -3'
miRNA:   3'- aaGCGG--------AGCCGCUUGUcGACaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 39046 0.66 0.579906
Target:  5'- -aCGUCgaGGCGcuACAGCUGUucgccgaggcgaaAGCGCg -3'
miRNA:   3'- aaGCGGagCCGCu-UGUCGACA-------------UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 38706 0.67 0.515778
Target:  5'- gUCGUacUUCGuCGAGCAGCUGgccgccGCGCu -3'
miRNA:   3'- aAGCG--GAGCcGCUUGUCGACau----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 36948 0.66 0.54809
Target:  5'- gUCGCagcCGGCcAGCuaGGCUGcgGGCGCg -3'
miRNA:   3'- aAGCGga-GCCGcUUG--UCGACa-UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 34396 0.66 0.54809
Target:  5'- -aCGUCggaCGGCGAcCAGCUGaAGCa- -3'
miRNA:   3'- aaGCGGa--GCCGCUuGUCGACaUCGcg -5'
24215 5' -56.6 NC_005263.2 + 33582 0.66 0.559006
Target:  5'- aUCGaaaaagCGGCGAACGGCgcc-GCGCu -3'
miRNA:   3'- aAGCgga---GCCGCUUGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 32878 0.66 0.581011
Target:  5'- -gUGCC--GGCGGGCGGCgaguuucGUGGCGUc -3'
miRNA:   3'- aaGCGGagCCGCUUGUCGa------CAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 32245 0.68 0.447711
Target:  5'- gUUCGCCUgcaucugcugaaucgCGGCGAGCcacGCga-AGCGCg -3'
miRNA:   3'- -AAGCGGA---------------GCCGCUUGu--CGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 31329 0.67 0.493623
Target:  5'- -aCGUC-CGGCGAuacgccgGCGGCcGUcaGGCGCg -3'
miRNA:   3'- aaGCGGaGCCGCU-------UGUCGaCA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29960 0.71 0.318629
Target:  5'- aUCgGCCUgcgcagCGGCGGGCAGCgcgaucAGCGCg -3'
miRNA:   3'- aAG-CGGA------GCCGCUUGUCGaca---UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29886 0.69 0.405203
Target:  5'- gUCGCg-CGGcCGGACAGCgUGUGauacuGCGCg -3'
miRNA:   3'- aAGCGgaGCC-GCUUGUCG-ACAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 29226 0.74 0.199311
Target:  5'- aUUUGCCgUCGGCGcGCAGC-GgcGCGCc -3'
miRNA:   3'- -AAGCGG-AGCCGCuUGUCGaCauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 28111 0.68 0.463772
Target:  5'- aUCGCgUCGuuG-ACGGCaGUGGCGCc -3'
miRNA:   3'- aAGCGgAGCcgCuUGUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 27963 0.66 0.54809
Target:  5'- -gUGCC-CGGCGcGACGGCcGUAccgucGCGCu -3'
miRNA:   3'- aaGCGGaGCCGC-UUGUCGaCAU-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.