miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 40120 0.66 0.792548
Target:  5'- cAUCGGGCcgacucGUGCAgcucUgGGC--GCCGCGUg -3'
miRNA:   3'- -UAGCCCG------CAUGU----AgCUGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 41437 0.66 0.74083
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 21904 0.66 0.7723
Target:  5'- -aCGGcCGccGCAUCGcGCGGccGCCGCGCg -3'
miRNA:   3'- uaGCCcGCa-UGUAGC-UGUU--UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 37462 0.66 0.792548
Target:  5'- -gCGcGGCGUccauguguacuGCGgcgUGACGAACgGCGCc -3'
miRNA:   3'- uaGC-CCGCA-----------UGUa--GCUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 41327 0.66 0.74083
Target:  5'- --aGGGCGgcgACuUCGACGAgGCCGaGCu -3'
miRNA:   3'- uagCCCGCa--UGuAGCUGUU-UGGCgCG- -5'
24218 5' -53.6 NC_005263.2 + 25886 0.66 0.74083
Target:  5'- -cCGGGCcgACGcCGGCGAcgGCCGCGa -3'
miRNA:   3'- uaGCCCGcaUGUaGCUGUU--UGGCGCg -5'
24218 5' -53.6 NC_005263.2 + 47176 0.66 0.750394
Target:  5'- -gCGGGUGccaacccguucgaUGCGUCGACGAguaACC-CGCc -3'
miRNA:   3'- uaGCCCGC-------------AUGUAGCUGUU---UGGcGCG- -5'
24218 5' -53.6 NC_005263.2 + 17247 0.66 0.755664
Target:  5'- cUCGcGGUGUuccagccgcgucggaACAUCGGCGAACC-CGg -3'
miRNA:   3'- uAGC-CCGCA---------------UGUAGCUGUUUGGcGCg -5'
24218 5' -53.6 NC_005263.2 + 8716 0.66 0.761945
Target:  5'- gGUCGGccgcguccaucGCGUAC-UCGGCGAGCgGgGUc -3'
miRNA:   3'- -UAGCC-----------CGCAUGuAGCUGUUUGgCgCG- -5'
24218 5' -53.6 NC_005263.2 + 26319 0.66 0.751451
Target:  5'- -gCGGGCGaUGCG-CGAguGAUuCGCGCc -3'
miRNA:   3'- uaGCCCGC-AUGUaGCUguUUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 34910 0.66 0.751451
Target:  5'- -cUGGcGCGaAUGUCGACcuguGAugCGCGCg -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUG----UUugGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 33446 0.66 0.761945
Target:  5'- cGUCGGcGUGUgggGCAagaCGGCGGACgaGCGCg -3'
miRNA:   3'- -UAGCC-CGCA---UGUa--GCUGUUUGg-CGCG- -5'
24218 5' -53.6 NC_005263.2 + 34838 0.66 0.792548
Target:  5'- aGUCGGuGuCGgACAUCGugAAACaguucaGCGUg -3'
miRNA:   3'- -UAGCC-C-GCaUGUAGCugUUUGg-----CGCG- -5'
24218 5' -53.6 NC_005263.2 + 21586 0.66 0.792548
Target:  5'- cUCGccGCcgGCGUCGAC--GCCGCGCg -3'
miRNA:   3'- uAGCc-CGcaUGUAGCUGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 20725 0.66 0.792548
Target:  5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3'
miRNA:   3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 14244 0.66 0.782505
Target:  5'- -cCGuGGCGUGCGggcuggcuugCGGCG-GCCgGCGCa -3'
miRNA:   3'- uaGC-CCGCAUGUa---------GCUGUuUGG-CGCG- -5'
24218 5' -53.6 NC_005263.2 + 6712 0.66 0.782505
Target:  5'- gGUCGGGCGcaUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 35549 0.66 0.782505
Target:  5'- -gCGGGCGgGCGcuaCGGCGccgccGGCCGcCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
24218 5' -53.6 NC_005263.2 + 45457 0.66 0.771271
Target:  5'- uGUCGccgccgauacgccGGCaaGCG-CGAUGAACCGCGCg -3'
miRNA:   3'- -UAGC-------------CCGcaUGUaGCUGUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 36670 0.66 0.761945
Target:  5'- cAUUGGGCGaccugGCAgcauUCGAgCGcgggcaaggAGCCGCGCc -3'
miRNA:   3'- -UAGCCCGCa----UGU----AGCU-GU---------UUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.