miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 155 0.66 0.792548
Target:  5'- uUCGGuGCGaGCA-CG-CGAuCCGCGCc -3'
miRNA:   3'- uAGCC-CGCaUGUaGCuGUUuGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 790 0.69 0.612378
Target:  5'- -gCGGGUcgacgucggcacccaGUcCGUCGACAgcgGACUGCGCu -3'
miRNA:   3'- uaGCCCG---------------CAuGUAGCUGU---UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1282 0.67 0.719259
Target:  5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1627 0.67 0.734402
Target:  5'- gGUCGaacGCGU-CGUCGGCGGcguagcccuggaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1979 0.67 0.730096
Target:  5'- cUCGGGUGcccuuUGCuccCGACuguccuAGGCCGCGCc -3'
miRNA:   3'- uAGCCCGC-----AUGua-GCUG------UUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 2671 0.72 0.408021
Target:  5'- -gCaGGCGUGCGUUGugGuagcuGAUCGCGCg -3'
miRNA:   3'- uaGcCCGCAUGUAGCugU-----UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 3232 0.72 0.398618
Target:  5'- cUCGGGCGacgACAgguaGGCGcgaucGCCGCGCa -3'
miRNA:   3'- uAGCCCGCa--UGUag--CUGUu----UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 3918 0.69 0.563358
Target:  5'- -cCGGGCG-GCAauggCGGCAGGCCGaccgGCa -3'
miRNA:   3'- uaGCCCGCaUGUa---GCUGUUUGGCg---CG- -5'
24218 5' -53.6 NC_005263.2 + 4029 0.66 0.7723
Target:  5'- aGUCGGGCcacCAcUCGAgAAAUUGCGUg -3'
miRNA:   3'- -UAGCCCGcauGU-AGCUgUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 5595 0.73 0.380236
Target:  5'- cGUCGGGCauccGCA-CGGCGAgGCCGUGCg -3'
miRNA:   3'- -UAGCCCGca--UGUaGCUGUU-UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 5931 0.7 0.516516
Target:  5'- cUCGGGCGUgagcgucaugucguGCAcCGGCAAcUgGCGCa -3'
miRNA:   3'- uAGCCCGCA--------------UGUaGCUGUUuGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 6477 0.73 0.353745
Target:  5'- -gUGGGCcgcaGUGCAaccaggcagUCGACGAACgGCGCg -3'
miRNA:   3'- uaGCCCG----CAUGU---------AGCUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 6712 0.66 0.782505
Target:  5'- gGUCGGGCGcaUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 7772 1.11 0.000946
Target:  5'- gAUCGGGCGUACAUCGACAAACCGCGCa -3'
miRNA:   3'- -UAGCCCGCAUGUAGCUGUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 8036 0.7 0.530529
Target:  5'- -gCGaGGCGUccGCGcCGugGcGCCGCGCg -3'
miRNA:   3'- uaGC-CCGCA--UGUaGCugUuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 8716 0.66 0.761945
Target:  5'- gGUCGGccgcguccaucGCGUAC-UCGGCGAGCgGgGUc -3'
miRNA:   3'- -UAGCC-----------CGCAUGuAGCUGUUUGgCgCG- -5'
24218 5' -53.6 NC_005263.2 + 9530 0.68 0.652773
Target:  5'- -gCGGcCGUGCG-CGGCAgcGACCGaCGCg -3'
miRNA:   3'- uaGCCcGCAUGUaGCUGU--UUGGC-GCG- -5'
24218 5' -53.6 NC_005263.2 + 9822 0.83 0.090558
Target:  5'- --aGGGCGUGCAUCacguuGACGAACgGCGCg -3'
miRNA:   3'- uagCCCGCAUGUAG-----CUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 10152 0.7 0.509032
Target:  5'- -cCGGcGCG-GCAUCGGCcGGuuGCGCa -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUGuUUggCGCG- -5'
24218 5' -53.6 NC_005263.2 + 10756 0.66 0.792548
Target:  5'- -gCGcauGCGgcCGUCGGCAucaaAGCUGCGCg -3'
miRNA:   3'- uaGCc--CGCauGUAGCUGU----UUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.